Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397330.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_61.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59987

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15827--19020
171
18.7
170
73
6
1780
33
14
12
34
1.85
17302--18541
337
3.6
335
76
7
913
34
15
13
35
1.86
15823--19026
341
9.4
339
72
6
1497
33
14
12
34
1.85
19129--19559
171
2.5
170
76
5
431
33
15
14
36
1.88
24402--24781
171
2.2
172
75
5
378
33
12
11
37
1.79
26572--27345
171
4.5
171
74
3
615
31
14
13
35
1.85
28182--28825
171
3.8
171
76
5
602
34
14
11
34
1.83
38702--39576
172
5.1
170
74
5
481
33
13
12
35
1.83
39265--39576
171
1.9
161
87
3
376
35
12
13
34
1.83
39277--39700
171
2.5
162
78
11
347
34
11
12
35
1.80
40477--40521
22
2.0
22
82
0
54
33
0
8
57
1.30
41997--42622
340
1.9
323
84
2
702
34
15
11
33
1.82
41267--42622
171
8.0
170
76
3
1042
33
13
11
35
1.81
42893--43868
171
5.7
171
77
2
780
34
13
12
36
1.82
43970--44658
171
4.0
170
71
4
483
33
14
12
34
1.83
45850--47801
171
11.4
170
72
4
566
33
13
11
33
1.82
46132--46764
341
1.9
314
78
8
402
35
12
12
35
1.81
46979--47801
342
2.4
330
76
7
771
34
14
12
35
1.83
51536--52221
171
4.0
171
84
1
865
38
11
12
37
1.80
51544--52217
341
2.0
342
85
0
911
39
11
13
36
1.80
52612--52955
171
2.0
171
80
4
381
38
11
12
34
1.79
57045--57463
171
2.5
171
78
2
439
34
15
10
36
1.82

Tables:   1

The End!