genome.fa.s80.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397333.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_362.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52465

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4911--5342	171	2.5	170	77	5	435	32	15	11	38	1.84
6836--7698	171	5.0	171	78	2	845	33	15	12	34	1.86
7910--8363	171	2.7	170	77	4	475	35	12	11	37	1.79
8216--8506	150	1.9	150	81	2	343	33	13	13	39	1.83
8653--9041	169	2.3	170	80	6	439	33	16	13	35	1.89
8608--9334	171	4.3	169	76	5	599	33	14	14	36	1.86
8608--9268	172	3.9	171	77	3	555	32	14	13	36	1.86
9385--9758	171	2.2	171	81	1	428	36	12	13	35	1.82
12625--14332	171	10.0	169	81	5	1686	36	14	11	36	1.83
14468--15088	171	3.6	170	76	3	575	32	16	12	37	1.85
15320--15805	171	2.8	168	81	4	456	32	15	13	36	1.86
16010--16700	171	4.1	170	78	5	619	34	15	12	36	1.84
16754--17187	171	2.6	170	85	4	556	35	13	12	38	1.83
17005--17047	21	2.0	21	86	0	59	44	20	11	23	1.84
17026--17339	148	2.1	149	88	2	454	36	13	11	38	1.80
16200--18160	489	4.0	486	79	6	1862	34	14	11	38	1.83
17174--18254	171	6.3	171	82	5	1229	34	15	11	37	1.84
17174--18254	340	3.2	339	83	5	1331	34	15	11	37	1.84
19137--19455	171	1.9	161	84	2	336	36	12	11	36	1.80
19308--19630	171	1.9	161	85	3	364	33	15	13	34	1.86
22000--22329	172	1.9	171	81	1	401	35	15	13	35	1.86
23617--23656	21	1.9	21	84	0	53	22	15	17	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25721--26178	170	2.7	169	80	7	514	34	16	13	36	1.87
28313--28355	21	2.0	21	81	0	50	46	18	11	23	1.82
31079--31493	172	2.4	170	85	2	537	34	11	18	35	1.87
31339--31632	148	2.0	149	83	4	369	39	12	14	32	1.84
31713--32760	173	6.1	171	82	4	1146	36	12	16	33	1.87
32985--35988	171	17.5	170	76	5	2299	35	12	14	34	1.84
32985--42151	342	26.8	342	75	6	6853	35	11	14	34	1.83
32985--42151	513	17.8	512	76	6	6828	35	11	14	34	1.83
35289--35328	21	1.9	21	84	0	53	25	15	15	45	1.84
35992--40676	171	27.3	170	76	5	3704	36	11	14	35	1.83
37491--37539	21	2.3	21	92	0	80	16	20	14	48	1.80
37320--37710	192	2.0	192	88	3	574	34	12	14	38	1.84
40780--41316	171	3.1	170	91	0	840	34	12	17	35	1.87
41310--42151	171	4.9	168	81	6	824	36	13	15	34	1.87
41303--42151	343	2.5	342	82	4	982	36	13	15	34	1.87
41961--42000	21	1.9	21	84	0	53	25	15	17	42	1.88
42256--42821	169	3.3	170	81	2	683	32	13	16	33	1.88
44220--44580	171	2.1	170	82	3	429	34	11	14	36	1.83
45916--46819	170	5.3	169	75	6	777	33	12	16	35	1.85
47032--47928	171	5.2	170	74	4	603	34	11	14	34	1.82
47127--47924	342	2.3	341	76	7	795	34	11	14	35	1.83
49156--50339	171	6.9	169	81	4	1139	35	15	12	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49163--52465	342	9.7	340	79	8	3024	35	15	12	36	1.85
50216--50483	144	1.8	146	87	6	402	33	14	9	41	1.79
50341--52465	171	12.4	171	79	7	2044	35	15	12	36	1.85
49526--52440	830	3.4	831	80	9	3220	35	15	12	36	1.85

Tables:   1

The End!