genome.fa.s81.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397334.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1028.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51104

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2929	171	17.1	170	77	5	2427	34	14	12	38	1.84
10--2929	513	5.7	510	78	5	2676	34	14	12	39	1.84
3109--3487	171	2.2	171	79	6	419	33	13	12	39	1.83
4432--23020	171	108.7	170	73	7	9953	38	12	13	33	1.83
4435--23020	513	36.2	510	74	6	11745	38	12	13	33	1.83
15278--16336	341	3.1	338	77	5	952	38	13	13	34	1.84
16977--17002	12	2.2	12	100	0	52	38	11	34	15	1.83
18638--19030	168	2.3	170	79	6	402	43	11	12	33	1.78
23496--23829	171	2.0	163	83	4	361	36	14	12	34	1.83
24785--28775	171	23.1	169	71	10	1609	38	12	14	33	1.84
25663--26307	343	1.9	326	78	8	661	37	11	13	34	1.82
26361--30123	342	11.0	341	74	9	2563	38	12	14	34	1.85
26361--28775	171	14.2	172	79	4	2148	38	12	14	33	1.85
28484--29097	315	1.9	316	81	2	732	38	12	15	33	1.84
28829--29148	172	1.9	170	80	2	381	38	10	15	35	1.81
29410--30127	171	4.2	171	82	4	872	38	12	13	34	1.84
29314--30127	171	4.7	171	81	4	863	37	12	14	35	1.84
29431--30110	344	2.0	344	86	1	943	37	12	14	35	1.85
37761--37940	35	5.1	35	87	2	236	25	13	27	34	1.93
39928--43574	170	21.3	171	79	5	3333	38	12	14	34	1.84
39928--43574	341	10.7	341	79	5	3227	38	12	14	34	1.84
43440--43711	137	2.0	137	81	7	320	39	10	15	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43766--44046	140	2.0	140	82	2	341	43	13	13	30	1.82
43988--44253	137	1.9	136	80	2	300	36	12	15	36	1.84
44127--45480	171	8.0	172	78	5	1250	37	13	14	33	1.86
44498--45915	497	2.8	497	79	7	1231	37	13	14	33	1.87
44146--46138	342	5.9	330	76	7	1114	37	13	14	34	1.85
44402--46141	668	2.6	676	79	5	1772	38	13	14	34	1.85
45488--46237	171	4.4	170	80	2	775	37	12	14	34	1.84
46564--47225	171	3.9	171	79	1	675	39	11	11	34	1.79
46570--47215	342	1.9	331	84	2	787	39	11	11	35	1.78
47835--47939	52	2.0	52	85	7	142	41	13	18	26	1.87
47922--49104	170	6.9	170	76	5	917	37	12	14	33	1.84
47924--48746	341	2.4	338	80	8	884	38	12	14	34	1.84
49112--51104	171	11.6	171	76	8	1565	38	12	13	35	1.83
50022--50053	16	2.0	16	100	0	64	68	0	6	25	1.12
49851--50224	187	2.0	187	81	3	430	41	10	13	35	1.78

Tables:   1

The End!