genome.fa.s818.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398071.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_138.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26352

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2757--4006	170	7.3	170	73	4	697	33	14	9	37	1.79
3624--4006	172	2.2	172	83	2	484	35	14	9	40	1.79
4492--4724	120	1.9	119	82	5	292	37	13	12	36	1.82
5621--6192	169	3.4	169	80	4	587	35	15	10	38	1.82
8401--9250	172	5.0	171	73	4	549	34	13	10	37	1.78
9649--12153	172	14.7	171	78	4	2214	36	13	10	40	1.79
9708--12153	343	7.2	339	79	6	2176	35	13	10	40	1.79
14637--14676	21	1.9	21	89	0	62	40	12	10	37	1.77
16252--17497	172	7.3	170	74	6	822	34	13	10	37	1.80
16252--17129	343	2.6	333	79	8	874	34	13	11	38	1.81
16573--17500	169	5.4	169	72	8	407	33	14	10	38	1.81
20647--20957	172	1.9	161	82	2	248	35	13	10	36	1.80
21310--21758	172	2.6	171	80	3	483	34	13	11	40	1.80
22211--22693	169	2.9	169	78	0	446	32	12	11	37	1.79
23110--23441	170	2.0	159	76	9	290	33	14	9	40	1.78
24144--24493	171	2.0	171	84	3	454	40	8	14	36	1.78
24550--25819	170	7.4	172	80	7	1261	40	10	13	35	1.78
24499--25819	172	7.7	171	80	6	1272	40	10	13	36	1.79
24555--25819	342	3.7	342	82	3	1466	40	10	13	35	1.78

Tables:   1

The End!