genome.fa.s83.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397336.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_277.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49415

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2781--4946	171	12.8	168	72	8	1282	37	12	14	34	1.84
2843--4946	341	6.2	336	74	10	1181	37	12	14	34	1.84
5515--5820	161	1.9	161	84	1	407	36	11	14	37	1.82
6384--7304	171	5.4	171	77	7	770	37	12	16	33	1.86
6384--7082	339	2.1	340	80	7	785	38	12	15	34	1.84
11252--12602	172	7.9	170	77	6	1158	37	12	15	34	1.86
13591--13863	137	2.0	139	83	5	349	39	13	14	32	1.85
15783--17084	172	7.6	171	79	4	1176	36	13	15	34	1.86
14612--17211	171	15.1	171	72	9	1325	36	12	15	35	1.85
14751--17211	512	4.7	510	76	8	2046	36	12	15	35	1.85
18308--19626	171	7.7	169	76	5	1069	36	14	14	33	1.87
18308--19626	344	3.8	340	77	5	1138	36	14	14	33	1.87
18400--19626	514	2.4	511	84	3	1532	36	14	14	33	1.87
20327--21422	171	6.4	171	77	5	932	39	12	14	34	1.83
20327--21432	340	3.2	337	78	5	1026	39	12	14	34	1.83
21304--21567	135	2.0	135	86	4	372	37	14	12	35	1.84
21435--22235	171	4.7	168	80	5	813	39	12	13	34	1.83
21438--22245	343	2.4	342	81	4	880	39	12	13	34	1.83
23573--24337	171	4.5	170	79	2	611	37	11	15	34	1.85
26940--31876	171	28.8	169	71	10	1966	36	13	14	34	1.86
28882--31876	344	8.8	344	74	6	1840	36	12	14	34	1.85
28621--31876	515	6.4	504	73	7	2042	36	12	15	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34526--35594	341	3.1	333	79	5	1018	37	12	14	35	1.84
34526--35594	170	6.3	169	77	5	949	37	12	14	35	1.84
37750--39456	171	10.0	167	75	7	1085	34	14	12	37	1.85
37744--39456	344	5.0	340	75	6	1138	34	15	12	37	1.85
37744--39445	515	3.3	501	78	8	1412	34	14	12	37	1.85
40637--41688	172	6.1	170	77	7	867	33	15	12	39	1.85
40637--41590	343	2.8	343	77	8	832	33	15	11	39	1.84
41659--41709	21	2.4	21	96	0	93	31	21	5	41	1.77
41499--41880	192	2.0	191	83	2	489	32	14	13	39	1.85
43739--45176	171	8.4	171	78	5	1319	37	11	14	36	1.83
43778--45175	343	4.1	334	78	7	1220	37	12	14	36	1.83
43951--45185	510	2.4	515	80	4	1273	38	11	14	35	1.83

Tables:   1

The End!