genome.fa.s839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398092.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1398.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17720

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--1154	171	6.7	170	78	5	1053	34	14	12	38	1.84
9--1154	341	3.4	338	80	4	1241	34	14	12	38	1.84
1315--3243	171	11.3	168	79	5	1709	35	13	12	38	1.82
1315--3243	341	5.7	340	79	4	1872	35	13	12	38	1.82
4947--5275	171	2.0	162	86	3	385	34	11	12	38	1.79
4594--6188	343	4.7	342	72	6	813	33	12	11	37	1.80
5484--5798	171	1.9	159	83	6	321	34	14	11	36	1.82
6743--9351	171	15.4	171	75	5	1802	34	14	11	37	1.82
6863--9285	503	4.8	501	78	6	1562	35	13	11	37	1.82
10298--11165	173	5.1	170	77	8	712	38	12	14	35	1.83
10522--11165	343	1.9	340	80	5	769	40	11	14	33	1.82
11519--12211	170	4.1	171	78	5	645	38	12	14	35	1.83
11519--12211	341	2.0	339	80	6	776	38	12	14	35	1.83
12507--12931	164	2.5	168	76	4	430	39	9	13	34	1.78
13842--14163	171	1.9	159	80	7	285	37	10	13	35	1.78
15534--16249	171	4.2	171	73	2	447	37	12	13	34	1.82
16599--17720	171	6.6	169	76	7	901	34	13	12	39	1.82
16590--17720	342	3.3	340	80	6	1243	34	13	12	39	1.83

Tables:   1

The End!