Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397337.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_312.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49030

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1219--1694
170
2.8
170
82
4
539
35
13
15
36
1.86
2082--3219
171
6.7
169
81
3
1196
36
11
15
35
1.85
2083--3219
341
3.3
336
83
6
1326
36
11
15
35
1.85
3524--4047
170
3.1
170
79
6
524
35
13
12
37
1.83
4303--5272
172
5.7
171
84
3
1074
33
14
13
38
1.86
7629--8667
171
6.1
169
78
4
991
37
12
13
34
1.83
7632--8667
341
3.0
340
79
2
1006
37
12
13
34
1.83
9812--9841
16
1.9
16
93
6
53
63
0
30
6
1.20
10881--13887
171
17.6
171
77
5
2227
38
11
13
34
1.82
10881--13887
343
8.8
338
76
7
2166
38
11
13
34
1.82
13764--14009
130
1.9
130
83
4
318
40
10
10
38
1.74
13894--14339
171
2.6
169
79
5
493
40
13
10
34
1.80
26375--26527
76
2.0
76
92
2
254
41
8
12
37
1.73
41722--42796
171
6.3
170
75
6
794
34
13
12
36
1.82
41986--42768
172
4.6
169
77
7
649
34
12
12
39
1.81
42500--43074
301
1.9
302
82
7
731
37
12
11
38
1.79
42802--43515
171
4.2
169
80
7
691
35
13
11
40
1.80
45996--46753
171
4.5
168
81
7
775
38
12
14
34
1.83
45996--46752
342
2.2
339
81
7
870
38
12
14
34
1.83

Tables:   1

The End!