Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398095.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_140.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16650

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
644--1286
171
3.8
173
75
6
563
34
14
11
37
1.83
2987--5008
172
11.7
170
76
7
1583
35
15
13
36
1.86
2987--5019
342
5.9
340
79
6
1911
35
15
12
36
1.85
4053--4111
21
2.8
21
89
0
82
44
13
15
27
1.84
3901--4253
193
1.8
192
84
5
480
38
14
10
36
1.81
4075--5019
171
5.5
169
79
5
963
35
14
12
37
1.84
4095--5019
343
2.7
340
82
5
981
35
14
12
37
1.84
5128--6329
171
7.0
170
81
3
1254
35
14
12
36
1.84
5135--6329
341
3.5
336
81
4
1252
35
14
12
36
1.84
7088--7114
10
2.7
10
100
0
54
22
18
22
37
1.95
7544--7588
23
2.0
23
91
4
74
66
8
4
20
1.36
7798--8113
170
1.9
172
80
3
379
36
12
16
34
1.86
9238--9623
172
2.2
172
80
5
442
34
16
13
34
1.89
9775--10522
171
4.4
169
76
5
565
34
16
11
34
1.85
11321--11680
171
2.1
170
83
4
449
34
14
12
38
1.84
11321--12163
424
2.0
421
83
3
1077
34
13
12
37
1.82
11741--13788
171
12.0
170
77
4
1796
34
15
12
36
1.85
11741--13788
343
6.0
342
78
6
1720
34
15
12
36
1.85
14477--16350
172
11.0
169
77
4
1471
34
14
13
37
1.86

Tables:   1

The End!