genome.fa.s85.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397338.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_330.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49007

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--906	171	5.3	170	74	5	486	33	13	12	36	1.82
569--906	170	2.0	171	85	1	464	34	14	13	37	1.86
1137--3432	171	13.5	171	76	6	1590	34	13	13	39	1.83
1306--3434	678	3.1	675	77	6	1887	34	13	13	39	1.83
2767--3093	172	1.9	172	82	5	410	33	10	13	42	1.78
3674--4033	166	2.1	170	84	3	451	35	14	12	37	1.84
6306--6615	171	1.8	171	83	2	417	38	13	12	35	1.83
9570--11039	171	8.6	170	79	6	1470	35	13	12	39	1.82
11698--13279	171	9.3	169	76	9	1170	34	13	12	39	1.83
11698--13279	341	4.6	340	75	8	1301	34	13	12	39	1.83
11871--13279	510	2.8	510	76	9	1125	34	12	13	39	1.83
22416--22650	114	2.1	114	81	3	267	33	12	16	37	1.87
22530--24985	171	14.3	170	76	7	1786	38	13	13	34	1.83
22530--24986	511	4.8	507	76	8	2085	38	13	13	34	1.83
34734--35612	171	5.1	168	73	8	603	34	13	12	38	1.82
35875--37539	171	9.9	169	75	10	1124	36	13	12	37	1.83
35931--37500	514	3.1	501	78	8	1405	35	13	12	37	1.84
35876--37384	685	2.2	667	81	7	1622	35	13	12	37	1.83
37640--38526	169	5.2	168	77	8	769	34	12	11	40	1.80
37742--38526	339	2.3	338	80	6	838	34	13	11	40	1.81
37742--38526	170	4.6	169	77	8	663	34	13	11	40	1.81
40401--40839	169	2.6	160	78	10	327	35	12	11	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40254--40839	170	3.4	169	76	6	551	35	12	11	38	1.80
45362--45409	19	2.6	18	83	6	60	35	4	0	60	1.16
45362--45409	18	2.6	19	86	3	62	35	4	0	60	1.16
46362--48445	170	12.3	169	77	7	1480	34	14	13	37	1.85
46581--48080	171	8.9	157	73	13	487	34	13	13	38	1.84
46908--48445	171	9.0	169	78	5	1232	34	14	13	37	1.85
46908--48445	342	4.5	341	81	4	1503	34	14	13	37	1.85

Tables:   1

The End!