genome.fa.s86.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397339.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_835.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48763

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--3158	171	18.3	171	74	6	2117	34	13	11	37	1.81
39--4415	342	12.8	341	72	10	1195	34	13	11	37	1.81
945--5285	342	12.7	341	71	10	1663	34	13	11	37	1.81
3196--5285	171	12.0	169	72	9	1235	34	13	11	38	1.81
6309--6760	168	2.7	160	76	13	437	32	14	13	35	1.84
6596--7001	169	2.4	168	76	2	409	33	13	12	38	1.82
11468--14626	171	18.5	168	69	9	848	37	11	13	33	1.80
11426--12029	172	3.5	170	77	5	468	36	13	13	34	1.84
13452--14624	172	6.8	173	73	6	571	39	10	13	34	1.78
14338--14377	21	1.9	21	84	0	53	25	17	12	45	1.83
19541--20958	171	8.3	171	71	7	501	34	13	10	37	1.79
20599--20935	172	2.0	162	82	8	394	34	14	10	37	1.81
21790--22841	171	6.2	170	78	6	882	36	13	11	37	1.81
24391--24713	170	2.0	158	81	7	296	36	13	9	37	1.77
23427--27596	171	24.4	171	75	6	2886	34	13	11	37	1.81
23432--27596	341	12.2	339	74	7	2559	34	13	11	37	1.81
23427--27596	512	8.1	509	73	7	2541	34	13	11	37	1.81
24558--27590	854	3.6	838	77	5	2058	34	13	11	36	1.82
27870--29853	171	11.6	170	72	8	1017	34	14	11	36	1.83
27870--29853	341	5.8	339	73	6	1116	34	14	11	36	1.83
31162--31812	340	1.9	331	81	6	765	36	13	12	36	1.82
31154--31812	171	3.9	170	79	2	673	35	13	11	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33465--34377	171	5.3	170	74	5	559	34	13	11	36	1.82
32939--34377	341	4.2	339	74	6	853	35	13	11	36	1.81
34484--35149	172	3.9	172	74	8	477	35	12	11	38	1.80
34484--35114	343	1.8	339	79	6	718	35	12	11	39	1.79
35530--36918	172	8.1	170	74	5	928	33	12	11	38	1.81
37103--37406	167	1.8	169	83	2	414	37	12	12	37	1.82
38603--40178	171	9.2	171	72	6	1017	34	13	11	36	1.81
39322--40176	341	2.5	332	75	8	656	35	13	10	36	1.80
40913--41267	170	2.1	170	81	7	416	36	12	12	38	1.81
41113--41385	151	1.8	150	86	5	399	36	13	12	36	1.83
41860--42475	171	3.6	170	74	4	474	34	13	12	35	1.83
42828--43520	171	4.1	170	75	6	510	35	12	10	37	1.79
43194--43520	172	1.9	172	85	2	451	37	13	9	38	1.78
43785--48621	171	28.2	168	71	8	1363	34	13	11	37	1.80
45366--45725	189	1.9	182	80	8	413	35	12	10	41	1.78
45545--48621	171	18.0	169	74	6	1959	35	13	10	38	1.80
43784--48621	342	14.1	340	72	6	2540	34	13	11	37	1.80
45771--48102	511	4.6	503	74	7	1135	35	13	10	37	1.80
47397--48016	343	1.8	332	82	4	703	35	12	11	38	1.79
48490--48763	150	1.8	150	84	3	372	40	16	10	33	1.82

Tables:   1

The End!