genome.fa.s87.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397340.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_602.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48516

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--690	171	4.0	167	76	9	608	40	13	12	33	1.82
4--668	341	1.9	340	81	3	798	40	13	12	33	1.82
1019--2452	171	8.4	169	75	10	657	39	11	12	35	1.80
984--2457	342	4.3	341	77	7	1273	39	12	12	35	1.80
4877--5469	171	3.5	171	76	5	547	39	12	12	34	1.80
5730--6124	171	2.3	171	81	4	449	39	12	13	34	1.81
6226--7705	171	8.7	169	76	5	1176	38	12	14	34	1.84
6226--7685	513	2.8	508	79	5	1515	38	12	13	34	1.83
9112--9749	171	3.8	165	77	9	583	40	12	13	33	1.82
10106--10689	171	3.4	171	77	6	579	40	11	12	34	1.81
10637--10834	109	1.8	109	84	4	274	32	15	19	32	1.92
10746--18619	171	46.2	169	73	8	4041	38	12	13	34	1.82
10746--18616	512	15.4	508	73	7	3685	38	12	13	34	1.82
10897--18301	681	10.9	668	72	9	1993	38	12	13	34	1.82
10746--18619	341	23.1	340	74	6	4574	38	12	13	34	1.82
10790--18619	853	9.2	854	74	7	3589	38	12	13	34	1.82
19778--19915	71	1.9	73	88	2	208	26	23	16	33	1.96
19754--19928	73	2.4	72	80	7	203	24	23	16	36	1.94
20950--21275	171	1.9	171	82	3	413	39	12	13	34	1.82
21774--21976	109	1.9	110	85	5	286	31	15	19	33	1.93
21883--23001	171	6.6	172	77	7	895	37	12	14	35	1.85
21890--23002	341	3.3	334	76	5	1002	37	12	14	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25417--26748	170	7.8	170	71	9	709	38	13	12	34	1.82
25417--26748	171	7.8	169	72	9	678	38	13	12	34	1.82
25486--26329	341	2.5	338	79	9	847	39	13	12	34	1.83
28407--30710	171	13.5	170	77	6	1900	38	12	13	35	1.83
28415--30716	513	4.5	509	78	6	2176	38	12	13	35	1.83
30590--30834	124	2.0	124	79	6	264	34	11	16	36	1.86
31610--34248	341	7.7	339	77	7	2038	38	12	14	34	1.84
30714--34244	171	20.7	171	74	6	2223	37	12	13	33	1.83
34246--34322	7	11.4	7	87	8	99	15	0	36	48	1.46
34321--38520	171	24.6	170	75	7	2812	39	12	13	34	1.82
34321--38520	341	12.3	340	75	7	2949	39	12	13	34	1.82
34344--38519	512	8.2	507	75	6	3041	39	12	13	34	1.81
39047--39745	170	4.1	168	75	8	521	39	11	14	34	1.82
40945--41015	7	10.4	7	82	8	85	47	35	0	16	1.47
40949--41015	33	2.0	34	88	2	100	46	35	0	17	1.49
41660--42069	171	2.4	170	80	9	426	36	11	10	40	1.77
42576--42896	169	1.9	170	80	6	382	36	14	13	36	1.85
43354--44568	171	7.1	169	77	8	883	34	14	12	38	1.83
43318--44611	341	3.8	337	77	7	1098	34	14	12	38	1.84
44014--45232	633	1.9	631	80	5	1422	34	14	13	37	1.85
43847--45416	805	2.0	802	80	6	1793	34	14	13	37	1.84
44700--45590	171	5.2	170	77	6	784	35	13	12	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46283--47535	171	7.3	169	77	6	973	39	12	13	34	1.83
46283--47533	514	2.4	505	81	6	1365	39	12	13	34	1.83
47287--47829	294	1.8	294	79	3	619	41	11	13	34	1.80
47537--48503	171	5.7	170	78	7	778	39	12	13	34	1.81
46729--48300	805	1.9	807	80	6	1835	39	12	13	34	1.82

Tables:   1

The End!