genome.fa.s88.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397341.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1295.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48317

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613--1793	171	6.9	169	80	5	1189	38	14	13	32	1.86
613--1715	513	2.1	513	84	4	1418	39	14	14	32	1.86
2451--4098	170	9.7	171	80	4	1623	38	12	14	33	1.85
2462--4092	341	4.8	341	79	6	1595	38	12	14	33	1.85
4199--6423	171	13.1	170	79	5	2082	33	14	13	37	1.86
4199--6423	341	6.5	341	79	6	2091	33	14	13	37	1.86
6524--13216	171	39.2	169	79	5	6088	37	14	14	33	1.87
6524--13216	341	19.6	338	79	4	6102	37	14	14	33	1.87
6524--13214	512	13.1	507	81	4	6185	37	14	14	33	1.87
14024--14417	171	2.3	171	82	3	474	35	12	17	34	1.88
14947--15316	170	2.2	170	80	6	428	39	11	13	34	1.82
16647--18345	171	10.0	169	74	7	1179	37	13	14	33	1.85
16647--18345	511	3.3	506	76	7	1310	37	13	14	33	1.85
18558--19615	170	6.2	169	79	7	1068	39	13	13	33	1.84
18510--22299	341	11.2	341	75	9	1711	38	13	14	33	1.85
18558--19793	170	7.3	168	76	7	984	39	13	13	33	1.84
19796--22311	170	14.8	169	77	8	1946	38	13	14	33	1.86
19803--22315	341	7.4	338	80	6	2275	38	13	14	33	1.86
22552--23213	165	3.9	170	76	6	612	34	13	13	39	1.84
22552--23205	170	3.9	169	76	7	614	34	13	13	38	1.84
22552--23213	342	2.0	336	88	2	984	34	13	13	39	1.84
24485--25039	171	3.3	168	76	7	534	34	16	14	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25101--25466	172	2.1	170	82	4	432	33	13	13	39	1.84
25101--25682	170	3.4	169	78	5	580	32	13	14	39	1.84
26044--27845	171	10.5	171	79	4	1746	37	13	14	33	1.86
26044--29697	342	10.5	342	72	7	2128	36	13	13	32	1.85
27950--29699	172	10.1	171	75	8	1434	36	14	14	33	1.86
27982--29718	171	10.1	171	74	9	982	37	14	13	33	1.85
29418--29960	291	1.9	293	86	1	786	35	14	14	33	1.87
29711--31617	171	11.3	170	74	7	1224	37	13	14	33	1.85
30186--30825	156	3.9	156	75	11	378	37	13	15	33	1.87
29844--30825	497	2.0	497	80	5	1117	37	14	13	33	1.85
30342--31617	512	2.5	510	78	5	1252	38	13	15	33	1.86
30342--31617	341	3.8	333	77	5	1187	38	13	15	33	1.86
32960--35480	171	14.7	169	78	4	2031	38	14	13	33	1.84
32960--35480	343	7.4	340	78	5	2039	38	14	13	33	1.84
37997--38902	171	5.3	170	73	2	465	36	13	13	32	1.84
41126--41433	172	1.9	153	80	11	215	39	14	14	32	1.86
40513--41851	341	3.9	341	77	4	1250	37	14	13	32	1.85
40513--41851	171	7.8	169	76	5	1070	37	14	13	32	1.85
41952--42998	171	6.1	171	84	4	1252	33	14	14	38	1.85

Tables:   1

The End!