genome.fa.s89.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397342.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_117.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48098

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226--789	172	3.3	168	81	6	606	36	13	13	35	1.84
1656--6661	171	29.3	171	77	4	3703	37	11	13	35	1.81
7470--7829	171	2.1	171	84	3	465	39	11	12	36	1.79
8877--10436	172	9.1	170	81	2	1654	36	12	11	39	1.79
8877--10435	342	4.6	341	82	4	1717	36	12	11	39	1.79
8877--10442	687	2.3	680	82	3	1845	36	12	11	39	1.79
10541--10971	170	2.5	170	78	8	448	35	13	13	36	1.84
11202--11585	170	2.3	171	81	2	414	38	11	13	34	1.80
12012--14190	171	12.7	171	75	4	1652	37	11	13	35	1.81
15128--15856	171	4.3	170	77	3	603	35	12	13	35	1.83
16629--17638	171	5.9	171	77	4	802	35	11	12	35	1.80
16941--17612	341	2.0	331	78	5	688	35	12	13	36	1.82
18075--18889	171	4.8	168	76	4	573	35	11	13	36	1.82
18962--19300	171	2.0	171	83	4	434	38	9	13	38	1.78
19455--19767	171	1.9	159	84	2	315	36	11	13	34	1.81
19967--21107	171	6.7	171	77	3	985	36	12	12	36	1.81
19967--21107	341	3.3	341	80	4	1192	36	12	12	36	1.81
21399--22347	171	5.6	169	73	6	446	37	10	12	35	1.77
23303--24079	170	4.6	171	71	6	464	37	9	13	35	1.78
23056--24723	171	9.8	170	73	4	789	36	10	12	35	1.78
26354--27255	172	5.3	171	81	4	962	40	11	13	35	1.80
26354--27255	170	5.3	171	80	4	971	40	11	13	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27451--29676	171	13.0	171	77	4	1885	38	11	12	36	1.79
27451--31646	513	8.2	508	71	7	2081	37	11	12	35	1.79
29820--30711	171	5.2	169	80	4	918	39	11	13	36	1.80
29817--31646	342	5.4	341	76	7	1676	38	12	13	36	1.82
30704--31646	170	5.5	170	81	3	952	37	13	13	35	1.83
31882--33284	171	8.1	169	79	8	1340	38	10	12	37	1.79
31882--33284	342	4.0	342	81	7	1486	38	10	12	37	1.79
32836--32884	21	2.3	21	89	0	80	20	14	12	53	1.73
32670--33052	192	2.0	192	86	4	531	38	11	13	36	1.81
32508--33223	363	2.0	363	89	2	1098	38	10	13	37	1.79
33505--34042	171	3.2	171	73	2	463	35	10	12	35	1.78
34384--35033	171	3.8	172	83	6	741	37	12	13	36	1.82
35413--35847	171	2.5	169	77	5	399	40	9	11	36	1.73
35990--36300	171	1.8	171	82	5	405	39	9	12	38	1.76
36535--36928	171	2.3	171	84	1	486	40	10	11	35	1.76
36535--37027	171	2.9	165	78	7	432	37	10	12	35	1.77
37173--38634	170	8.6	170	75	6	1071	37	12	12	36	1.81
39186--39776	171	3.5	169	75	4	504	34	12	13	36	1.82
42690--43843	171	6.8	168	75	7	826	37	10	13	36	1.78
43079--43572	170	3.0	160	73	16	301	38	9	12	36	1.76
44325--44657	170	2.0	159	72	16	296	36	10	13	37	1.79
43991--45156	171	6.9	169	74	3	822	36	11	13	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45983--46302	161	2.0	161	84	2	419	37	10	12	38	1.79
46142--47530	171	8.1	171	70	4	623	36	10	12	35	1.78
45983--47530	342	4.6	338	71	6	955	36	10	12	36	1.78

Tables:   1

The End!