genome.fa.s900.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398153.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1456.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37134

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--5045	171	29.2	170	71	7	2548	33	14	12	34	1.84
4--5132	683	7.5	679	72	6	3452	33	14	12	35	1.84
5233--5869	171	3.7	168	79	4	659	35	14	13	36	1.86
5233--5869	342	1.9	341	82	4	809	35	14	13	36	1.86
6093--6428	170	2.0	171	80	8	391	34	14	14	36	1.87
7668--7984	171	1.9	161	81	4	307	34	14	13	34	1.86
7877--8195	171	1.9	161	81	7	308	34	15	12	34	1.85
9150--10369	171	7.2	171	83	2	1551	33	14	13	37	1.86
9150--10369	510	2.4	508	84	3	1617	33	14	13	37	1.86
10477--11880	340	4.1	341	85	1	1780	35	13	16	35	1.87
10477--11880	511	2.7	509	81	5	1514	35	13	16	35	1.87
13825--14555	171	4.3	169	74	5	635	35	12	15	32	1.85
15188--15609	172	2.5	171	79	3	472	34	12	15	35	1.85
15802--16595	171	4.7	169	74	4	608	36	14	11	32	1.83
16767--17252	171	2.8	169	75	3	472	34	13	11	37	1.81
17413--17739	171	1.9	171	86	0	465	37	14	12	35	1.84
18639--19826	171	7.0	168	79	5	1134	34	15	12	36	1.86
18639--20254	341	4.8	338	81	6	1657	34	15	12	37	1.86
19673--19952	150	1.9	150	82	5	361	31	17	10	40	1.83
19813--20255	171	2.6	173	88	3	621	34	16	12	36	1.86
20679--22646	341	5.8	338	78	4	1620	33	14	13	36	1.85
20686--22646	170	11.5	170	78	4	1821	33	14	13	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20679--22166	684	2.2	682	81	4	1719	34	14	13	36	1.86
20679--22646	513	3.8	509	79	5	1801	33	14	13	36	1.85
20894--22646	684	2.6	679	80	4	1794	33	14	13	36	1.85
22747--23594	171	5.0	166	73	6	565	35	13	11	35	1.82
24628--26335	171	10.1	170	80	4	1702	35	15	12	37	1.85
24628--26335	514	3.4	507	80	5	1824	35	15	12	37	1.85
24633--26275	685	2.4	671	81	5	1760	35	15	12	36	1.86
26436--28183	171	10.2	169	81	6	1879	36	12	16	35	1.86
26436--28183	512	3.4	507	83	4	2000	36	12	16	35	1.86
28616--30179	171	9.2	171	83	2	1728	36	12	16	35	1.86
30887--34238	171	19.6	170	78	4	2629	34	14	11	35	1.83
34481--35726	171	7.3	171	83	3	1485	35	15	11	36	1.85
34481--35726	341	3.7	341	82	3	1550	35	15	11	36	1.85
35967--36411	170	2.6	172	84	2	565	34	15	11	35	1.84
36538--37134	171	3.5	171	78	1	534	33	13	11	36	1.80

Tables:   1

The End!