genome.fa.s91.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397344.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_631.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47675

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3657--4036	171	2.2	171	81	1	422	33	12	12	38	1.81
4138--6520	171	14.0	171	79	4	2216	39	12	12	35	1.82
4138--6514	682	3.5	680	81	4	2551	39	12	12	35	1.82
4143--6520	341	7.0	338	79	5	2239	39	12	12	35	1.82
6973--7878	171	5.3	169	75	5	714	38	13	13	33	1.84
9320--10661	170	7.9	169	71	7	789	35	12	12	36	1.81
9766--10661	341	2.6	341	75	5	882	35	12	12	37	1.81
11920--12787	171	5.1	170	75	6	617	32	13	14	37	1.84
11919--12655	170	4.3	173	77	5	500	32	12	13	38	1.83
14228--14964	171	4.3	168	75	5	603	37	13	11	34	1.81
14066--14964	342	2.7	332	76	10	778	37	12	12	34	1.81
15156--15781	171	3.7	170	77	6	570	37	13	12	34	1.83
16111--16439	168	2.0	168	84	2	428	36	11	14	36	1.84
16063--16644	172	3.4	170	77	5	584	39	11	13	35	1.81
17756--18344	171	3.4	169	79	3	599	38	12	12	35	1.82
18445--19042	171	3.5	171	74	6	403	35	13	13	33	1.84
18720--19099	171	2.2	171	79	7	398	40	13	12	34	1.82
20551--20945	172	2.3	170	82	6	476	37	13	14	34	1.84
24136--24687	171	3.2	169	77	5	488	39	12	11	34	1.80
29927--29965	20	1.9	20	84	5	51	25	7	12	53	1.65
30352--31565	171	7.1	170	75	3	914	34	14	12	36	1.84
30355--31565	513	2.4	510	80	2	1250	34	14	12	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34713--34767	24	2.3	24	77	0	56	27	27	14	30	1.95
37707--38255	172	3.2	169	80	6	556	40	12	11	35	1.78
39085--39123	19	2.1	18	86	13	53	41	2	0	56	1.13
39374--39422	22	2.3	22	78	3	55	38	2	4	55	1.31
39240--40033	171	4.6	169	75	6	591	35	13	11	37	1.81
40137--40861	171	4.2	170	72	4	406	33	12	12	36	1.81
42119--42712	171	3.5	168	84	4	692	34	10	11	42	1.77
46021--46422	172	2.3	171	80	5	409	42	11	10	35	1.76

Tables:   1

The End!