Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398179.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1483.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16430

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
509--820
169
1.9
160
75
13
294
39
12
12
33
1.80
4783--6306
171
8.9
169
73
7
929
35
13
11
37
1.80
4997--6306
341
3.8
338
77
6
1156
36
13
11
37
1.80
6910--8572
170
9.8
170
74
8
1116
38
11
13
34
1.81
8680--9933
171
7.3
169
77
9
1063
35
14
11
38
1.83
8680--9934
340
3.7
338
80
7
1310
35
14
11
38
1.83
8679--9935
511
2.5
508
80
6
1380
35
14
11
38
1.83
10060--11081
169
6.0
169
79
5
962
34
13
11
39
1.81
10042--11081
340
3.1
336
78
6
1041
34
13
11
39
1.82
11182--12869
171
9.9
170
74
9
1042
39
11
12
35
1.80
11581--12869
511
2.5
507
80
4
1367
39
11
12
35
1.80
11191--12712
340
4.5
337
76
8
1088
39
11
13
36
1.80

Tables:   1

The End!