genome.fa.s93.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397346.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2504.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45461

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--689	171	4.0	169	76	6	579	35	12	11	38	1.81
15--687	342	2.0	330	81	3	699	35	13	11	38	1.81
2109--3062	171	5.6	171	72	7	603	34	12	11	39	1.79
2351--3076	172	4.2	170	73	9	505	34	12	12	38	1.82
3275--3589	170	1.9	160	87	4	373	33	11	13	38	1.80
3257--3697	171	2.6	169	75	3	418	32	11	12	38	1.80
4744--5131	167	2.3	168	78	6	376	32	11	13	42	1.81
6328--7697	171	8.0	169	79	7	1206	38	12	12	35	1.82
6366--7697	508	2.6	503	79	8	1345	39	12	12	35	1.82
8565--9940	170	8.1	170	76	7	1125	35	12	12	39	1.81
8568--9929	341	4.0	338	81	4	1418	35	12	12	39	1.81
10701--12239	171	9.0	171	76	7	1149	34	14	12	38	1.84
10842--12182	513	2.6	505	78	7	1334	34	14	12	38	1.84
11970--12505	266	2.0	266	91	1	869	34	15	13	36	1.87
11865--12653	437	1.8	436	82	4	1036	35	14	12	37	1.84
11683--12798	608	1.8	608	81	5	1371	34	14	12	38	1.83
12291--13105	171	4.8	167	77	6	690	34	12	12	39	1.81
13219--13581	170	2.1	170	80	7	396	34	12	11	40	1.81
14250--14289	21	1.9	21	85	10	55	40	15	17	27	1.89
14311--14468	78	2.0	78	92	2	264	34	7	7	50	1.59
14113--15225	421	2.6	417	86	3	1452	34	13	11	40	1.80
14732--14889	78	2.0	78	92	2	264	34	5	7	53	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14811--16067	171	7.3	168	74	9	834	34	13	12	39	1.83
21061--22648	172	9.3	170	75	8	1000	39	12	13	33	1.83
22566--22727	78	2.1	78	89	5	249	51	8	7	33	1.59
22648--23404	172	4.4	171	75	6	602	40	12	13	33	1.82
22648--23573	171	5.4	168	74	8	571	40	11	12	34	1.80
22856--23573	342	2.1	341	80	5	781	41	11	12	34	1.80
23505--23662	78	2.0	78	89	4	239	48	8	6	35	1.61
23621--27083	171	20.4	169	76	6	2431	38	12	13	34	1.83
23741--27083	509	6.6	504	75	8	2018	38	12	13	34	1.82
23621--26846	680	4.8	681	75	7	1925	38	12	13	34	1.82
28978--29611	172	3.7	172	77	4	424	34	13	12	39	1.82
29229--29685	172	2.7	171	76	3	461	33	15	13	37	1.86
29643--29801	78	2.0	79	87	6	234	34	6	8	50	1.59
30210--31372	171	6.8	170	80	4	1040	34	13	12	39	1.83
30426--31375	513	1.9	511	80	4	1149	34	13	12	39	1.83
31546--32116	171	3.3	169	75	8	512	34	13	11	40	1.81
32705--34861	171	12.6	170	78	5	1799	34	13	13	38	1.84
35548--38317	171	16.3	171	76	8	1976	35	12	12	39	1.81
38495--40205	171	10.0	170	76	9	1265	39	12	13	34	1.82
38632--40205	342	4.6	342	79	6	1466	39	12	13	34	1.82
42019--42327	171	1.8	172	81	3	390	38	11	13	33	1.81
43303--43831	171	3.2	164	73	9	464	39	12	13	34	1.83

Tables:   1

The End!