genome.fa.s94.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397347.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_745.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45050

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1197--1471	146	1.9	146	81	8	335	34	14	10	41	1.79
3642--4971	171	7.8	170	78	4	1176	37	11	14	34	1.82
3641--4750	512	2.2	511	82	3	1333	37	11	15	35	1.84
3641--4971	512	2.6	512	80	4	1281	37	11	14	34	1.82
6845--7745	171	5.3	171	78	5	872	37	12	14	35	1.84
10248--10300	15	3.6	15	79	5	63	35	0	0	64	0.94
10589--10970	173	2.2	170	81	4	439	38	12	13	35	1.82
13915--13948	16	2.1	17	88	5	52	67	2	0	29	1.05
15687--17245	171	9.1	172	75	7	1119	38	11	13	35	1.82
17052--17083	16	2.0	16	93	0	55	53	18	0	28	1.45
17782--21116	171	19.5	169	76	5	2387	34	13	12	38	1.82
18282--18312	16	1.9	16	93	0	53	29	0	22	48	1.51
17782--21014	343	9.4	342	77	5	2561	35	13	11	37	1.82
17793--21080	514	6.4	510	76	6	2663	34	13	11	38	1.82
21579--21907	173	1.9	172	85	4	448	35	12	12	39	1.80
22157--22190	14	2.4	14	90	5	50	29	2	0	67	1.05
22221--22298	5	15.2	5	72	16	54	25	2	1	70	1.07
22221--22298	20	4.1	19	71	15	63	25	2	1	70	1.07
22145--22290	50	2.9	49	71	18	131	26	5	1	66	1.22
22539--25348	172	16.4	172	80	4	2651	38	11	14	35	1.83
22539--25339	685	4.1	681	84	3	3179	38	11	14	35	1.83
22539--25344	513	5.5	508	81	4	2718	38	11	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25863--28527	171	15.6	170	69	8	844	37	11	12	34	1.79
25871--26594	169	4.2	169	77	8	576	40	11	14	33	1.81
26685--28492	171	10.6	170	76	4	1399	38	11	12	36	1.80
29071--29388	171	1.9	161	79	12	340	36	11	15	34	1.82
33271--33603	170	2.0	161	77	7	310	38	12	12	33	1.81
33187--34249	171	6.2	168	73	6	577	36	11	12	35	1.80
36784--37142	172	2.1	171	81	4	402	38	10	14	36	1.82
43971--45047	172	6.3	171	78	7	1015	35	13	11	39	1.80

Tables:   1

The End!