genome.fa.s95.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397348.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_819.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43526

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
894--2566	171	9.8	171	77	5	1472	37	12	13	35	1.83
894--2566	341	4.9	340	79	5	1555	37	12	13	35	1.83
4342--5521	171	6.9	170	78	5	1084	38	12	13	35	1.82
9197--10591	171	8.1	167	76	5	1125	36	13	12	38	1.82
9198--10586	514	2.7	506	79	6	1363	36	13	12	38	1.82
9197--10577	343	4.0	339	78	6	1049	36	13	12	38	1.82
11495--12360	171	5.1	168	74	9	589	39	12	13	34	1.82
13031--14331	171	7.6	170	79	3	1182	37	12	13	36	1.82
15311--16242	172	5.4	171	79	6	897	39	10	13	35	1.80
15323--16242	344	2.7	336	81	5	990	39	10	13	35	1.80
18557--19122	171	3.3	168	74	6	476	36	13	13	34	1.84
19822--20611	324	2.4	322	82	7	870	35	14	11	37	1.82
19708--21453	171	10.3	170	73	7	966	34	13	11	36	1.82
19822--21453	342	4.8	333	74	8	1234	35	14	11	36	1.83
22493--24902	171	13.8	171	71	9	1257	34	13	13	38	1.84
23423--23834	211	2.0	210	85	4	571	34	15	11	38	1.83
23641--24891	341	3.7	343	75	8	813	34	14	13	37	1.86
23632--24891	172	7.4	170	77	5	979	33	15	13	37	1.86
25921--27756	171	10.8	170	77	7	1542	38	12	13	35	1.82
25921--27755	339	5.4	340	77	7	1609	38	12	13	35	1.82
28379--31281	171	17.0	170	78	4	2520	36	12	14	35	1.85
28443--32765	342	12.5	340	74	8	2795	37	12	14	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28379--32764	514	8.5	510	74	8	2987	37	12	14	35	1.84
31261--31322	17	3.4	17	68	20	52	45	3	24	27	1.68
31257--31332	39	1.9	39	91	0	125	44	3	23	27	1.71
31080--31489	209	2.0	210	83	3	531	39	11	14	34	1.83
31290--32766	171	8.6	169	77	6	1208	37	12	14	35	1.84
33945--35492	171	9.0	169	70	7	618	33	13	12	37	1.82
34291--35492	342	3.5	342	76	5	852	34	13	12	37	1.83
35286--35703	211	2.0	209	83	5	529	33	15	11	38	1.84
35489--36804	171	7.7	167	76	5	906	34	15	12	37	1.85
35952--36780	344	2.4	339	79	5	900	35	16	11	36	1.85
37229--37962	170	4.3	170	73	8	436	33	14	13	37	1.86
37938--38247	171	1.9	156	85	2	300	34	13	12	35	1.82
41372--42815	171	8.5	171	80	5	1314	36	14	12	37	1.83
41445--43525	341	6.0	337	74	10	1356	35	13	11	37	1.82
42829--43525	171	4.1	170	79	3	619	33	13	11	37	1.81
43003--43324	172	1.9	161	88	3	396	33	13	11	38	1.81

Tables:   1

The End!