Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398212.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1516.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24026

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
695--1011
170
1.9
160
78
11
327
34
11
13
36
1.81
3829--3869
19
2.2
19
95
0
73
24
17
14
43
1.86
6388--7422
171
6.1
171
81
4
1117
35
15
11
37
1.83
11131--12115
169
5.8
167
73
8
600
35
13
10
37
1.78
12462--13860
171
8.2
169
69
5
600
34
12
10
36
1.77
13015--13864
342
2.5
332
76
7
708
35
12
10
37
1.78
13965--14456
170
2.9
169
79
7
453
36
14
10
36
1.81
15400--15705
150
2.0
151
84
3
393
33
14
10
41
1.80
18976--19546
171
3.4
169
76
5
555
36
15
9
36
1.80
23142--23709
170
3.3
170
74
3
523
38
10
13
34
1.79

Tables:   1

The End!