genome.fa.s96.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397349.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_32.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43062

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1377--2369	171	5.9	169	76	10	805	39	12	12	34	1.82
2366--3707	171	7.9	170	76	8	982	35	12	12	39	1.81
2366--3707	343	3.9	341	78	8	1164	35	12	12	39	1.81
2823--3742	340	2.7	336	79	8	724	36	12	12	38	1.81
3710--5115	171	8.3	171	82	2	1382	38	13	13	34	1.83
3848--5116	509	2.5	509	83	3	1498	38	13	13	34	1.83
5250--6085	171	4.9	170	78	7	716	35	12	11	40	1.79
6973--10246	341	9.6	340	75	6	2311	35	12	12	39	1.81
6951--10246	171	19.4	171	76	5	2476	35	12	12	39	1.81
11244--12377	171	6.6	170	80	3	1086	36	13	12	37	1.83
11244--12389	342	3.4	337	80	4	1214	36	13	12	37	1.83
11250--12396	513	2.2	513	82	4	1336	36	13	12	38	1.82
14860--14906	17	2.7	17	78	15	51	2	36	0	61	1.08
14837--14919	16	4.9	17	68	25	52	1	37	0	61	1.04
17171--20639	171	20.4	168	73	9	1780	38	12	13	34	1.83
17505--19236	672	2.6	672	77	6	1564	39	12	13	34	1.84
17171--20639	513	6.8	508	74	6	2513	38	12	13	34	1.83
17171--20639	342	10.2	340	76	5	2427	38	12	13	34	1.83
21771--21862	36	2.6	35	82	1	121	31	7	16	44	1.75
23229--31257	171	46.9	170	75	7	4978	38	12	13	34	1.82
27580--27965	169	2.3	160	76	14	316	36	11	15	34	1.83
31775--33266	171	8.8	169	76	7	1026	34	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32098--32140	21	2.0	21	81	0	50	46	18	11	23	1.82
31776--33130	510	2.6	507	79	5	1385	34	12	12	39	1.81
31828--33226	338	4.1	336	76	8	1174	34	12	11	39	1.81
33423--34531	172	6.5	171	80	6	1086	39	11	13	35	1.81
34680--40554	171	34.6	172	74	8	2429	39	11	13	34	1.81
37532--40553	171	17.7	170	78	6	2608	39	11	13	35	1.80
34664--40872	342	18.4	339	75	8	3497	39	11	12	34	1.81
40406--40711	150	2.0	150	85	3	409	39	11	12	36	1.79

Tables:   1

The End!