genome.fa.s98.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397351.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1059.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43034

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--817	172	4.8	170	80	5	797	38	13	13	33	1.83
4--817	343	2.4	342	78	5	824	38	13	13	34	1.83
718--916	104	1.9	104	89	2	310	49	7	10	33	1.65
830--4379	171	20.7	170	77	7	2863	39	12	13	34	1.82
830--4379	683	5.2	679	77	8	2949	39	12	13	34	1.82
7026--7080	25	2.2	24	84	6	74	32	16	27	23	1.96
9486--10431	171	5.5	168	79	5	830	33	13	12	39	1.83
10534--12712	170	12.8	171	78	5	2000	39	12	13	35	1.82
10533--12712	341	6.4	339	78	6	2031	39	12	13	35	1.82
12712--14666	171	11.4	171	77	5	1352	33	14	13	37	1.85
12712--14666	342	5.7	340	78	4	1754	33	14	13	37	1.85
14889--17888	171	17.6	171	79	5	2583	34	14	12	38	1.84
14889--17871	341	8.8	337	77	7	2414	34	14	12	38	1.84
18513--19963	171	8.5	170	78	3	1317	34	14	12	38	1.84
18524--19964	513	2.8	507	82	5	1643	34	14	12	38	1.84
21077--22843	171	10.4	169	79	5	1559	34	14	12	37	1.85
21086--22841	512	3.4	506	79	5	1681	34	14	12	37	1.85
21077--22843	341	5.2	340	77	8	1510	34	14	12	37	1.85
23257--26711	171	20.4	170	74	7	2211	34	13	13	37	1.84
25810--26089	153	1.8	153	85	4	395	33	14	12	38	1.85
25977--26711	169	4.4	167	76	9	674	33	13	14	37	1.86
27390--28781	171	8.2	170	77	7	1038	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27390--28700	342	3.8	339	77	5	1221	34	13	13	38	1.84
28891--29679	171	4.6	171	76	6	452	39	12	13	34	1.81
33169--35123	171	11.5	171	76	6	1514	34	12	13	39	1.83
35243--35285	19	2.3	19	92	4	70	53	0	2	44	1.13
36897--37276	171	2.2	170	84	2	485	37	12	15	34	1.84
37469--38151	171	4.0	172	75	5	472	37	14	13	31	1.85
39045--41216	171	12.7	170	80	4	2143	35	13	12	38	1.83
41056--41366	150	2.1	150	84	6	398	33	13	12	40	1.82
41203--42143	171	5.5	170	72	3	643	33	12	12	36	1.81

Tables:   1

The End!