Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398233.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1537.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22472

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3027--3270
128
1.9
128
88
3
375
33
11
17
37
1.86
3366--4111
172
4.4
171
79
4
702
34
12
14
38
1.84
3362--4028
343
1.9
343
87
1
980
35
11
14
38
1.82
3362--4111
343
2.2
343
84
2
945
34
12
14
38
1.84
4700--6986
171
13.4
170
80
5
2180
36
14
11
36
1.84
4700--6983
172
13.4
170
80
5
2182
36
14
11
36
1.84
4706--6983
687
3.3
678
80
6
2389
36
14
11
36
1.84
7213--7984
172
4.5
172
84
4
952
38
13
10
36
1.80
7213--7985
341
2.2
340
85
4
1000
38
13
10
36
1.81
10964--12656
171
9.9
171
75
5
1272
36
14
11
37
1.82
10964--12648
343
4.9
343
78
5
1415
36
14
11
37
1.82
11268--12630
514
2.6
507
77
7
1288
36
14
11
37
1.81
14779--17211
171
14.2
170
77
5
2079
37
13
14
34
1.86
14790--17211
341
7.1
341
78
4
2180
37
13
14
34
1.86
14779--17211
512
4.8
512
82
3
2811
37
13
14
34
1.86
17930--18649
172
4.2
168
74
9
553
36
14
11
36
1.83
18258--18298
21
2.0
21
85
9
57
46
7
21
24
1.77
17858--18520
170
3.9
171
76
7
560
37
14
11
35
1.83
17858--18649
342
2.3
342
81
4
857
37
14
11
35
1.83

Tables:   1

The End!