genome.fa.s99.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397352.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1178.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42928

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--412	171	2.4	173	76	8	407	34	12	12	41	1.80
416--2426	171	11.8	170	76	6	1332	33	14	13	39	1.84
427--2624	342	6.4	338	75	5	1633	32	13	13	39	1.84
1--9909	513	19.4	508	70	7	3095	32	13	12	37	1.83
483--9583	684	13.3	675	69	7	2330	32	13	12	37	1.83
438--2367	852	2.3	848	79	4	2078	33	14	13	39	1.85
2867--9909	171	41.2	170	74	6	4060	33	14	12	38	1.84
2867--9909	342	20.6	340	75	5	4615	33	14	12	38	1.84
2867--9909	513	13.7	510	75	5	4491	33	14	12	38	1.84
8365--8407	22	2.0	22	85	0	59	37	0	4	58	1.19
11667--18737	171	41.4	170	76	6	5029	34	14	12	38	1.84
11667--20090	342	24.6	344	75	9	4438	34	14	12	38	1.84
11666--20090	512	16.4	507	74	9	5037	34	14	12	38	1.84
18534--18936	208	1.9	210	81	4	483	35	14	11	39	1.82
18738--20090	171	8.0	171	77	6	1154	35	13	12	38	1.82
27877--28752	171	5.2	171	78	8	833	35	13	12	38	1.83
28749--31116	171	13.9	171	78	6	1898	34	13	12	38	1.83
28749--32436	341	10.9	340	75	7	2692	34	13	12	38	1.83
28749--31115	513	4.6	510	81	5	2396	34	13	12	38	1.83
30404--30717	159	2.0	159	81	3	373	36	14	10	38	1.81
30556--31109	169	3.2	169	79	7	525	35	12	11	40	1.81
31162--32436	171	7.5	170	78	3	1184	34	13	12	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31184--32964	512	3.5	513	79	7	1717	34	13	12	38	1.83
32314--32577	141	1.9	141	84	0	357	35	17	14	32	1.90
32137--32745	312	1.9	313	82	3	762	35	15	12	36	1.85
31976--32924	484	2.0	484	83	2	1217	35	14	12	37	1.85
32443--32977	171	3.1	169	80	4	624	35	14	11	37	1.83
33080--33584	171	3.0	171	79	4	504	35	13	12	38	1.82
33624--34295	171	3.9	171	80	3	663	34	14	12	38	1.84
34439--40083	171	33.2	171	77	5	4808	34	13	12	39	1.83
34461--40083	341	16.5	341	78	6	4497	34	13	12	39	1.83

Tables:   1

The End!