Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018398247.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_155.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15595

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--830
171
4.8
168
81
5
876
36
13
11
38
1.81
1--811
342
2.4
341
84
4
970
36
12
11
38
1.81
829--1293
171
2.7
170
84
4
623
36
13
12
36
1.83
346--1293
482
2.0
483
82
4
1151
36
13
12
37
1.82
3348--4969
170
9.5
167
78
8
1251
39
11
14
34
1.82
4296--4335
21
2.0
20
85
14
55
32
10
12
45
1.75
3348--4969
511
3.2
498
78
9
1574
39
11
14
34
1.82
3348--4969
341
4.8
337
78
6
1463
39
11
14
34
1.82
6542--6992
168
2.7
171
73
5
423
36
15
11
34
1.84
7582--8072
171
2.9
171
79
4
542
37
13
13
34
1.83
8802--9473
169
4.0
170
73
5
509
33
13
11
36
1.81
9907--12482
171
15.0
170
80
5
2202
37
11
14
35
1.83
9907--12482
172
15.0
171
81
3
2342
37
11
14
35
1.83
9907--12482
341
7.5
339
79
4
2264
37
11
14
35
1.83
12704--13036
170
2.0
162
81
9
379
33
14
12
36
1.83
12746--13807
172
6.3
170
78
7
916
35
13
12
36
1.84
13991--15574
513
3.1
503
79
6
1420
36
13
12
36
1.83
13953--15595
171
9.6
169
77
6
1201
37
13
12
36
1.84

Tables:   1

The End!