genome.fa.s1.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000001.1 Hibiscus syriacus cultivar Beakdansim tig00000002_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2159989

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 891 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2041065--2041103	20	2.0	20	89	0	60	35	10	20	33	1.86
2046732--2046773	3	13.7	3	95	5	75	69	0	30	0	0.89
2046725--2046770	19	2.5	19	96	3	85	67	0	32	0	0.91
2048577--2048655	20	3.9	20	88	1	122	18	36	29	15	1.92
2049007--2049076	34	2.1	32	86	5	95	31	15	30	22	1.95
2054717--2054880	82	2.0	82	100	0	328	35	7	20	36	1.81
2057984--2058032	22	2.2	22	82	13	64	42	18	2	36	1.62
2057992--2058053	23	2.7	23	87	2	81	37	19	6	37	1.78
2058414--2058466	20	2.6	21	84	6	72	37	20	7	33	1.81
2059739--2060512	3	262.0	3	82	11	962	64	0	35	0	0.98
2068939--2069002	20	3.4	20	66	29	59	45	18	4	31	1.70
2068889--2069010	35	3.4	36	87	6	176	43	18	4	32	1.72
2073529--2073655	35	3.7	35	83	9	145	42	17	7	33	1.76
2081687--2081723	18	2.1	18	89	0	56	37	5	2	54	1.38
2082345--2082384	17	2.3	18	91	4	64	40	5	0	55	1.22
2083392--2083432	21	1.9	22	90	5	66	26	19	17	36	1.94
2087369--2087442	23	3.2	23	88	1	103	16	27	24	32	1.96
2087436--2087492	24	2.4	23	82	2	69	17	21	26	35	1.95
2087786--2087855	35	2.0	35	100	0	140	37	11	8	42	1.72
2090762--2090839	22	3.5	21	75	18	70	50	1	0	48	1.09
2090762--2090830	22	3.2	22	80	16	90	49	1	0	49	1.09
2091501--2091540	3	13.3	3	100	0	80	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2092435--2092529	21	4.6	21	84	7	131	31	24	22	22	1.98
2092455--2092548	41	2.3	41	100	0	188	34	20	22	23	1.97
2092476--2092548	20	3.6	20	82	10	103	35	19	21	23	1.96
2093291--2093519	42	5.3	42	87	8	341	36	21	20	20	1.95
2093391--2093470	29	3.0	29	69	27	95	37	18	21	22	1.94
2093291--2093512	92	2.5	85	89	6	338	36	21	20	21	1.95
2099390--2099509	35	3.3	36	89	5	181	43	20	5	31	1.73
2099441--2099501	21	3.2	21	65	29	64	42	21	4	31	1.74
2099392--2099536	35	4.1	36	83	11	142	41	19	6	33	1.76
2103996--2104115	35	3.3	36	89	5	181	43	20	5	31	1.73
2104047--2104107	21	3.2	21	65	29	64	42	21	4	31	1.74
2103998--2104142	35	4.1	36	83	11	142	41	19	6	33	1.76
2104340--2104566	115	2.0	114	90	0	355	38	15	19	25	1.91
2106104--2106152	18	2.7	18	93	0	80	53	2	30	14	1.52
2109189--2109336	64	2.3	64	84	5	192	29	17	20	32	1.96
2112894--2112925	14	2.3	14	94	0	55	31	15	6	46	1.71
2113383--2113530	64	2.3	64	84	5	192	29	17	20	32	1.96
2122988--2123281	144	2.0	144	90	1	464	22	22	38	16	1.93
2133665--2133693	1	29.0	1	100	0	58	100	0	0	0	0.00
2140759--2141871	199	5.6	199	83	2	1319	32	14	14	38	1.87
2140759--2141871	399	2.8	399	91	2	1720	32	14	14	38	1.87
2143191--2143226	12	3.0	12	87	0	54	47	2	8	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2145822--2145852	15	2.0	16	93	6	55	25	3	38	32	1.72
2146139--2147099	201	4.8	201	90	1	1408	32	16	13	37	1.88
2147357--2147424	19	3.6	19	97	0	127	54	10	1	33	1.43
2148980--2149014	18	1.9	18	100	0	70	5	37	0	57	1.23
2149372--2149401	15	2.0	15	93	0	51	13	56	10	20	1.65
2151582--2152326	182	4.1	182	87	2	1046	28	16	13	41	1.86
2153000--2153024	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8

The End!