Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001019.1 Hibiscus syriacus cultivar Beakdansim tig00002032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123050

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6729--6823
33
2.9
33
98
0
181
20
14
26
38
1.91
9408--9448
21
2.0
21
90
0
64
34
24
26
14
1.94
16796--16857
29
2.1
29
96
0
115
32
8
19
40
1.81
17152--17262
32
3.5
32
78
0
114
34
16
18
31
1.93
22290--22361
3
24.7
3
83
10
87
36
1
0
62
1.04
22275--22361
29
2.8
31
81
13
117
35
1
0
63
1.02
22290--22361
17
4.5
17
83
13
82
36
1
0
62
1.04
22277--22361
32
2.8
32
83
7
122
36
1
0
62
1.03
23399--23438
21
1.9
21
84
0
53
47
2
12
37
1.55
23676--23766
6
12.7
7
71
22
50
28
2
4
64
1.24
23734--23779
22
2.1
22
88
11
69
28
0
4
67
1.10
23821--23852
14
2.2
15
94
5
57
18
6
0
75
1.01
24179--24218
2
20.0
2
100
0
80
50
0
0
50
1.00
35482--35531
18
2.8
18
96
0
91
40
8
0
52
1.31
35787--35852
20
3.3
20
82
0
87
36
16
19
27
1.93
36184--36254
22
3.2
22
93
0
124
35
15
9
39
1.81
36634--37326
122
5.7
122
90
2
1009
40
14
19
25
1.89
37143--37204
20
3.2
20
68
11
56
45
9
20
24
1.81
37693--37761
3
24.0
3
74
14
65
30
2
0
66
1.06
37697--37754
8
7.2
8
77
14
57
29
1
0
68
0.99
37691--37756
23
2.9
22
84
10
89
28
1
0
69
0.97
38732--38771
21
1.9
21
89
0
62
50
2
10
37
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39057--39109
23
2.3
22
81
18
63
28
0
5
66
1.15
39241--39525
149
1.9
151
88
5
436
37
6
8
47
1.59
47530--47686
63
2.4
63
82
7
163
45
4
6
43
1.49
47575--47615
21
1.9
22
90
5
66
51
4
0
43
1.23
47528--47686
34
4.9
31
67
25
78
45
4
6
43
1.49
51806--51833
10
2.8
10
100
0
56
67
0
0
32
0.91
52131--52172
18
2.4
17
84
7
57
50
4
0
45
1.23
52136--52198
22
2.8
24
78
11
69
44
4
0
50
1.23
52164--52229
27
2.5
26
80
4
78
39
3
0
57
1.14
52366--52430
31
2.1
31
97
0
121
49
9
10
30
1.69
53194--53365
60
2.9
60
80
5
186
33
17
5
43
1.71
56968--56994
9
3.0
9
100
0
54
0
22
33
44
1.53
64259--64442
60
3.1
60
82
3
192
30
20
5
42
1.75
69045--69096
20
2.6
20
90
0
86
34
19
25
21
1.96
69152--69197
22
2.2
22
88
7
69
36
28
15
19
1.92
69206--69274
20
3.5
20
72
7
77
31
21
18
27
1.97
69202--69297
20
4.8
19
71
12
61
32
19
20
27
1.97
70022--70046
9
2.8
9
100
0
50
32
0
8
60
1.26
83931--84047
56
2.1
57
86
1
164
29
13
8
47
1.73
92147--92180
15
2.2
15
89
5
50
8
23
2
64
1.36
95002--95063
21
3.0
21
97
0
115
14
27
14
43
1.84
103048--103079
16
2.0
16
93
0
55
34
25
6
34
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
104683--104978
61
4.9
59
72
12
201
35
11
11
42
1.76
106258--106319
30
2.1
30
100
0
124
30
25
12
30
1.93
111690--111753
32
2.0
32
96
0
119
37
18
10
32
1.86

Tables:   1

The End!