genome.fa.s1053.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001053.1 Hibiscus syriacus cultivar Beakdansim tig00002083_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88106

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970--1008	17	2.3	17	86	8	53	33	0	2	64	1.08
5774--5959	74	2.5	74	82	5	232	32	11	13	41	1.81
15391--15421	2	15.5	2	100	0	62	51	0	0	48	1.00
18110--18160	2	25.5	2	100	0	102	50	0	0	49	1.00
19611--19685	3	25.3	3	97	2	143	68	0	0	32	0.90
21876--21941	28	2.4	28	97	2	125	36	13	10	39	1.80
22689--22730	19	2.2	19	87	8	59	50	14	4	30	1.63
22689--22731	20	2.2	19	83	4	59	51	13	4	30	1.62
26170--26218	18	2.8	18	84	3	64	24	24	12	38	1.90
26401--26533	66	2.0	66	100	0	266	27	18	19	35	1.95
28825--28872	25	1.9	25	86	0	69	47	16	8	27	1.75
32389--32457	22	3.1	22	79	6	68	73	2	4	18	1.12
33139--33177	20	2.0	19	95	5	69	0	0	33	66	0.92
33565--33591	9	3.0	9	100	0	54	44	0	0	55	0.99
33625--33860	39	6.5	37	71	14	154	45	3	3	47	1.36
33741--33783	2	22.0	2	95	4	79	48	0	0	51	1.00
33900--34010	37	3.0	38	85	7	133	45	9	3	42	1.53
33907--34038	36	3.6	35	81	7	113	46	9	3	41	1.51
34584--34990	85	4.8	85	87	3	561	25	19	21	33	1.97
35857--35968	39	3.0	36	77	12	109	43	7	3	45	1.48
35950--35992	2	22.0	2	84	13	54	46	2	2	48	1.27
44894--44940	24	1.9	25	86	4	69	25	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45112--45184	23	3.2	23	75	7	67	39	23	16	20	1.92
48166--48227	26	2.4	26	97	0	115	25	19	6	48	1.72
49462--49514	22	2.4	22	100	0	106	16	18	28	35	1.93
49965--50045	40	2.1	39	86	4	110	32	19	20	27	1.97
50258--50311	22	2.5	22	100	0	108	37	27	18	16	1.93
50502--50539	19	2.0	19	89	0	58	26	13	7	52	1.67
51607--51643	18	2.1	18	90	10	58	27	0	8	64	1.21
55951--56000	21	2.4	21	100	0	100	28	8	30	34	1.86
61734--61800	34	2.0	34	93	0	116	26	35	26	10	1.89
61772--61804	14	2.4	14	94	0	57	24	39	30	6	1.79
61786--61870	33	2.6	33	84	3	100	27	25	37	9	1.87
61959--62044	29	3.0	29	91	0	127	24	30	30	15	1.95
62783--62822	21	1.9	21	89	0	62	35	22	27	15	1.94
62819--62915	31	3.3	30	75	16	94	36	19	21	22	1.95
72619--72665	21	2.2	21	80	0	58	21	27	14	36	1.93
72646--72728	41	2.0	41	81	4	96	36	19	18	26	1.94
72661--72728	20	3.3	21	87	6	95	39	19	19	22	1.92
73095--73162	19	3.5	19	82	7	91	48	22	20	8	1.77
73204--73241	20	1.9	20	100	0	76	5	15	28	50	1.66
73338--73708	186	2.0	181	89	6	561	46	18	12	21	1.82
73338--73708	94	4.1	94	91	4	575	46	18	12	21	1.82
75403--75466	20	3.2	20	82	8	85	45	17	25	12	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76112--76198	21	4.2	21	83	2	113	39	18	25	17	1.92
76105--76198	41	2.3	42	90	1	145	37	19	24	19	1.94
79823--79859	14	2.6	14	91	8	58	56	0	8	35	1.29
82269--82326	29	2.0	29	96	0	107	41	18	10	29	1.84

Tables:   1

The End!