genome.fa.s1062.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001062.1 Hibiscus syriacus cultivar Beakdansim tig00002099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  178865

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382--435	18	2.9	19	83	5	58	33	9	38	18	1.83
7766--7855	28	3.2	27	81	10	92	57	15	1	25	1.45
13042--13129	35	2.6	34	80	5	88	63	15	3	17	1.44
13817--13850	13	2.8	13	86	13	54	8	20	8	61	1.52
13817--13849	11	2.8	12	90	9	50	9	21	9	60	1.54
16928--16986	21	2.7	21	81	7	64	25	23	25	25	2.00
22544--22727	64	2.9	64	79	13	200	29	17	23	29	1.97
22564--22723	65	2.5	64	86	5	207	28	17	23	30	1.97
22564--22764	65	3.1	63	79	10	201	27	17	23	31	1.97
23843--23869	2	13.5	2	100	0	54	51	0	0	48	1.00
25003--25063	30	2.0	31	81	9	72	63	3	1	31	1.20
25816--25877	13	4.6	14	77	15	69	6	43	12	37	1.69
29406--29494	8	11.1	8	77	0	70	33	3	26	35	1.73
29406--29494	16	5.6	16	76	5	81	33	3	26	35	1.73
36694--36737	19	2.3	19	100	0	88	20	25	34	20	1.97
39412--39528	42	2.8	41	81	6	110	26	11	46	15	1.80
45827--45869	22	1.9	23	85	4	61	60	0	23	16	1.35
51704--51753	18	2.9	18	91	5	77	28	6	36	30	1.81
51746--51863	44	2.7	44	95	0	218	26	12	22	38	1.90
52372--52441	35	1.9	37	91	5	117	37	37	11	14	1.82
53192--53227	17	2.1	18	90	10	58	55	11	5	27	1.57
53928--54082	76	2.0	77	96	3	287	41	15	16	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56035--56068	2	17.0	2	93	0	59	50	0	2	47	1.16
56464--56661	31	6.5	31	87	2	276	20	16	21	41	1.90
56848--56948	31	3.3	31	82	13	136	28	16	18	35	1.93
60532--60596	33	2.0	33	93	0	112	27	18	21	32	1.97
60573--60617	21	2.1	21	91	0	72	26	24	22	26	2.00
61511--61780	45	6.0	45	95	1	472	31	21	7	40	1.80
64671--64743	24	3.0	24	83	0	101	31	23	23	21	1.98
69334--69411	36	2.2	36	90	2	122	57	10	3	28	1.49
71837--71883	21	2.2	21	100	0	94	44	19	12	23	1.85
71898--71950	23	2.3	23	90	6	81	67	1	15	15	1.31
80720--80806	3	29.0	3	100	0	174	33	0	0	66	0.92
82711--82742	11	2.9	11	90	0	55	46	25	12	15	1.81
83546--83603	24	2.5	21	77	20	62	18	6	3	70	1.24
87239--89196	106	18.5	106	94	1	3341	33	24	18	23	1.97
90358--90389	11	2.9	11	90	0	55	46	25	12	15	1.81
91200--91256	24	2.5	21	76	20	60	19	7	3	70	1.26
93032--93075	23	1.9	23	86	9	63	68	2	2	27	1.14
94085--94150	31	2.1	31	100	0	132	34	18	4	42	1.70
98001--98028	10	2.8	10	100	0	56	39	10	0	50	1.37
104119--104172	3	18.0	3	100	0	108	33	0	0	66	0.92
106996--107039	23	1.9	23	86	9	63	68	2	2	27	1.14
107448--107474	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111934--111962	11	2.6	11	100	0	58	37	6	0	55	1.27
118050--118112	3	21.0	3	100	0	126	33	0	0	66	0.92
120946--120989	23	1.9	23	86	9	63	68	2	2	27	1.14
125893--125923	11	2.8	11	95	0	53	32	6	0	61	1.21
130201--130258	2	29.0	2	100	0	116	50	0	0	50	1.00
132970--133018	14	3.4	14	78	15	64	61	2	2	34	1.19
132977--133026	16	3.3	16	75	16	61	64	4	4	28	1.30
133597--134939	106	13.0	106	87	6	1927	24	17	23	33	1.96
133424--134939	405	3.7	405	87	5	1977	24	17	24	33	1.96
133395--134929	299	5.1	299	90	4	2178	23	17	24	34	1.96
140139--140187	14	3.4	14	78	15	64	61	2	2	34	1.19
140139--140195	16	3.9	15	76	17	57	61	1	3	33	1.23
152500--152616	40	3.0	40	94	2	202	45	0	0	54	0.99
152555--152657	23	4.1	25	67	22	81	46	0	1	51	1.12
152487--152667	15	12.5	15	73	20	163	45	0	1	53	1.07
152647--152776	32	4.4	32	79	18	172	36	0	9	53	1.38
152674--152904	54	4.2	54	77	20	253	34	0	11	53	1.41
152647--153097	166	2.7	167	88	6	620	34	0	12	53	1.42
152803--153170	32	11.0	32	69	16	160	33	0	12	52	1.43
152724--152968	112	2.2	112	93	0	427	34	0	12	53	1.42
152809--153052	18	14.9	16	66	24	93	34	0	11	53	1.40
152724--153192	192	2.5	185	82	12	575	33	0	13	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152979--153032	14	3.6	14	72	18	54	37	1	5	55	1.34
152804--153022	54	4.0	54	72	10	210	35	0	11	52	1.42
152724--153054	112	2.9	112	84	6	319	34	0	11	52	1.42
153056--153123	26	2.6	26	97	0	127	25	0	20	54	1.45
153185--153243	31	1.9	31	92	0	100	42	10	6	40	1.65
162422--162583	87	1.9	87	88	2	245	32	12	12	42	1.81
162668--162751	25	3.3	26	73	21	79	57	0	1	41	1.06
162875--162929	2	27.5	2	100	0	110	50	0	0	49	1.00
163175--163208	2	17.5	2	93	6	61	52	0	0	47	1.00
163474--163530	17	3.2	17	68	18	53	52	7	10	29	1.62
163468--163541	36	2.1	36	100	0	148	50	10	10	28	1.71
163463--163526	19	3.4	19	69	18	62	50	7	12	29	1.68
168916--169217	131	2.3	131	86	2	428	38	15	10	35	1.82
175909--175969	30	2.0	30	100	0	122	22	24	29	22	1.99
176671--176721	2	26.0	2	96	4	95	50	0	0	49	1.00
176887--176960	23	3.2	23	88	0	103	33	21	28	16	1.95
177067--177126	21	3.0	21	70	4	52	38	20	5	36	1.74
177177--177269	38	2.4	39	96	1	170	37	18	9	34	1.83

Tables:   1

The End!