genome.fa.s1063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001063.1 Hibiscus syriacus cultivar Beakdansim tig00002103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151484

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597--638	22	1.9	22	90	0	66	23	35	11	28	1.91
2665--2735	32	2.2	33	84	5	99	60	2	12	23	1.45
5934--5967	2	17.0	2	93	0	59	47	0	2	50	1.16
11697--11736	21	1.9	21	84	0	53	47	7	2	42	1.45
11817--11853	17	2.1	18	90	5	58	59	18	10	10	1.59
20001--20043	22	2.0	21	95	4	77	51	13	0	34	1.42
34178--34273	48	2.0	48	89	4	149	50	12	4	33	1.59
35460--35501	21	2.0	21	95	0	75	35	21	19	23	1.96
36727--36790	33	1.9	33	96	0	119	42	0	7	50	1.31
36741--36796	17	3.4	17	66	14	53	46	0	8	44	1.34
42306--42357	16	2.8	20	72	25	58	30	11	17	40	1.85
46276--46322	21	2.2	22	85	11	62	27	8	2	61	1.36
49046--49095	24	2.1	24	88	7	75	26	2	14	58	1.47
57158--57189	16	2.0	16	100	0	64	18	12	25	43	1.85
58089--58146	24	2.8	20	84	12	64	55	8	8	27	1.60
62954--62987	2	17.0	2	100	0	68	50	0	0	50	1.00
63531--63573	15	2.9	15	96	0	77	53	0	0	46	1.00
63581--63616	14	2.5	15	90	9	65	38	0	0	61	0.96
63529--63642	47	2.3	47	85	7	147	42	0	6	50	1.27
63596--63797	32	6.7	32	74	20	202	31	0	14	53	1.41
63596--63797	90	2.2	90	92	3	336	31	0	14	53	1.41
63700--63757	18	3.4	18	65	18	52	32	0	12	55	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63596--63797	58	3.4	56	72	21	178	31	0	14	53	1.41
63708--63817	58	1.9	58	85	7	152	30	0	15	54	1.41
63812--63870	31	1.9	31	85	0	82	45	10	3	40	1.54
67783--67900	21	5.7	21	71	6	80	35	26	16	21	1.95
67887--68020	20	6.7	20	83	6	164	35	27	17	18	1.94
67887--68021	40	3.3	40	82	5	182	36	27	17	18	1.94
68403--68473	33	2.2	33	92	0	115	11	22	18	47	1.80
68552--68629	41	1.9	41	97	0	147	44	16	25	12	1.83
68553--68628	21	3.7	21	83	3	109	46	17	25	11	1.82
70406--70595	93	2.1	92	96	1	353	23	12	18	45	1.84
70643--70770	19	7.3	19	74	18	116	45	28	17	8	1.78
70679--70770	33	2.8	32	90	6	141	45	28	18	7	1.76
70766--70900	19	7.6	19	75	16	119	11	18	23	46	1.81
70788--70844	14	3.7	14	77	20	60	10	21	22	45	1.82
70771--70863	33	2.8	33	95	0	168	10	20	21	47	1.80
72821--72856	13	2.6	14	82	8	56	33	0	22	44	1.53
72963--73060	19	5.4	19	84	13	143	45	17	22	14	1.84
72963--73079	53	2.2	53	96	1	218	43	17	24	13	1.86
73069--73276	19	11.7	19	80	15	257	14	22	17	45	1.85
73069--73290	52	4.2	52	91	4	270	14	22	17	45	1.85
73069--73223	71	2.2	71	97	0	292	15	21	17	45	1.85
73075--73290	33	6.2	33	77	17	215	13	22	17	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73126--73290	52	3.2	52	99	0	321	13	23	17	46	1.83
73126--73309	52	3.5	53	96	0	318	13	22	18	45	1.84
75771--75817	24	2.0	24	87	8	69	38	21	14	25	1.92
75784--75838	24	2.3	24	83	0	65	38	20	14	27	1.91
76500--76710	20	10.5	20	83	2	217	19	16	25	38	1.92
76518--76711	101	1.9	101	84	6	259	19	16	25	38	1.92
76500--76691	40	4.8	40	88	2	251	20	16	25	38	1.93
84974--85003	15	1.9	16	93	6	53	56	0	0	43	0.99
91721--91853	32	4.2	31	72	13	101	13	33	9	42	1.77
91668--91854	97	1.9	97	88	4	279	13	33	10	42	1.78
92077--92103	6	4.5	6	100	0	54	33	51	0	14	1.43
92669--92807	60	2.3	60	76	3	147	29	27	7	35	1.85
95139--95179	21	2.0	21	90	0	64	26	19	26	26	1.99
99572--100592	511	2.0	510	99	0	2015	30	18	21	29	1.97
101097--101551	225	2.0	225	99	0	901	31	12	25	29	1.93
101476--101855	140	2.7	142	79	6	425	30	13	26	29	1.94
101757--102266	174	2.9	174	85	2	675	32	16	25	25	1.96
102305--102778	174	2.7	174	95	0	831	32	15	24	26	1.96
101927--102643	379	1.9	379	88	0	1074	32	16	25	25	1.96
108340--108791	227	2.0	227	96	0	841	37	12	15	34	1.86
114080--114150	33	2.2	33	84	2	90	47	2	7	42	1.45
117980--118047	35	1.9	35	82	5	84	16	13	22	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122940--122994	28	2.0	28	86	13	78	30	0	0	69	0.89
122941--123002	32	2.0	31	84	9	81	30	0	0	69	0.89
122937--123001	28	2.5	26	79	20	73	30	0	0	69	0.89
123410--123456	12	3.9	11	84	13	58	14	2	0	82	0.75
123411--123527	28	4.4	25	73	20	78	19	5	0	73	1.09
136336--136743	141	2.9	140	82	2	487	31	11	26	30	1.92
136623--137113	174	2.8	174	89	0	714	31	15	24	27	1.96
146294--147494	173	7.0	173	76	9	686	31	15	25	27	1.95
146362--147494	348	3.3	341	76	8	818	31	15	25	27	1.95

Tables:   1

The End!