genome.fa.s1087.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001087.1 Hibiscus syriacus cultivar Beakdansim tig00002148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149113

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5377--5425	19	2.7	17	84	9	53	26	20	28	24	1.99
5397--5541	64	2.2	65	85	6	188	26	19	24	29	1.98
6452--6488	16	2.3	16	100	0	74	24	32	5	37	1.78
10602--10687	45	1.9	45	95	0	154	33	15	11	39	1.83
13568--13619	7	7.3	7	80	20	63	15	0	1	82	0.75
13568--13619	15	3.6	15	87	12	74	15	0	1	82	0.75
13562--13615	22	2.5	22	82	11	67	14	0	3	81	0.82
14959--15260	155	1.9	155	86	1	426	31	17	22	27	1.97
30092--30125	6	5.8	6	93	3	52	73	0	8	17	1.08
30118--30179	23	2.6	23	85	12	81	53	0	3	43	1.17
31015--31073	7	8.1	7	84	3	73	5	50	0	44	1.24
43197--43257	30	2.0	30	84	9	79	34	6	14	44	1.72
43347--43388	21	2.0	21	90	0	66	23	38	26	11	1.90
43374--43403	15	2.0	15	100	0	60	26	33	26	13	1.93
43353--43425	37	2.0	36	86	2	101	21	38	26	13	1.91
43510--43551	21	2.0	21	95	0	75	23	21	28	26	1.99
43580--43619	20	1.9	21	85	10	55	37	35	10	17	1.83
46691--46751	30	2.0	30	84	9	79	34	6	14	44	1.72
46841--46921	21	4.1	21	71	20	84	19	40	27	12	1.87
46847--46919	37	2.0	37	89	2	112	20	38	27	13	1.90
46868--46897	15	2.0	15	100	0	60	26	33	26	13	1.93
46947--46990	21	2.1	21	100	0	88	13	45	27	13	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47026--47067	21	2.0	21	95	0	75	23	21	28	26	1.99
47096--47135	20	1.9	21	85	10	55	37	35	10	17	1.83
49712--49764	21	2.5	21	81	0	61	20	24	18	35	1.95
49754--49900	20	7.2	20	87	1	177	38	19	21	21	1.94
49754--49900	62	2.4	61	86	3	208	38	19	21	21	1.94
49901--50051	19	8.7	19	70	21	107	12	23	19	44	1.85
49905--50031	33	3.8	33	95	0	227	11	23	18	45	1.83
49926--50013	14	5.6	14	67	23	50	11	23	19	45	1.83
50015--50058	20	2.3	19	92	4	70	22	22	18	36	1.95
50025--50097	20	3.6	20	68	17	60	24	19	23	32	1.97
52580--52626	24	2.0	24	87	8	69	36	12	21	29	1.91
54343--54512	84	2.0	84	89	0	259	34	21	20	23	1.97
54632--54718	18	4.8	19	79	12	94	47	12	8	32	1.71
54634--54717	35	2.4	35	85	2	105	47	11	8	32	1.70
58661--58832	57	3.0	57	88	0	254	14	19	30	36	1.91
63489--63717	57	4.0	57	89	1	325	14	20	29	36	1.92
68334--68562	57	4.0	57	86	1	307	16	18	29	35	1.93
71437--71539	31	3.4	31	82	2	127	40	2	0	55	1.21
71444--71526	30	2.7	31	83	3	105	44	3	0	51	1.18
71596--71680	25	3.3	24	75	20	82	54	0	7	38	1.28
71588--71908	60	5.5	58	75	11	262	52	0	8	38	1.34
71546--71909	30	12.3	30	75	12	222	52	0	7	39	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72745--72838	48	2.0	48	93	0	161	36	6	7	50	1.56
73199--73247	24	2.1	24	92	3	82	59	8	28	4	1.45
73654--73720	28	2.4	27	77	18	66	28	7	4	59	1.44
73877--73991	29	4.0	29	80	14	114	24	18	10	46	1.80
73875--73974	28	3.5	28	80	15	116	25	19	9	47	1.78
73952--73991	14	2.7	15	80	3	55	22	15	12	50	1.77
76386--76433	19	2.5	20	89	3	71	52	2	12	33	1.51
77756--77795	20	2.0	20	100	0	80	35	10	20	35	1.86
81476--81585	41	2.7	41	85	0	139	36	16	18	29	1.92
81250--81529	82	3.4	82	80	7	307	31	17	20	31	1.95
84189--84578	43	9.1	42	85	3	449	40	18	18	21	1.91
84189--84590	85	4.6	85	82	6	468	40	19	18	21	1.91
84913--84942	12	2.5	12	88	0	51	73	0	26	0	0.84
84911--84987	22	3.6	23	81	6	74	74	1	23	1	0.97
84911--84991	31	2.8	27	77	17	74	75	1	22	1	0.95
84911--84990	8	9.4	8	75	10	52	75	1	22	1	0.95
85519--85634	60	1.9	60	91	0	187	36	12	19	31	1.90
87547--87859	116	2.7	116	81	3	342	40	12	20	26	1.88
88001--88406	116	3.6	116	79	5	427	40	14	22	22	1.90
88348--88398	18	2.9	17	76	18	50	43	11	25	19	1.85
88743--88781	20	2.0	20	85	10	53	82	2	2	12	0.89
88754--88824	8	9.7	7	74	10	54	77	2	8	11	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88788--88824	8	4.8	8	93	6	67	78	0	10	10	0.97
88789--88823	15	2.3	15	100	0	70	77	0	11	11	1.00
88749--88837	23	3.7	23	76	7	70	75	5	8	10	1.19
89034--89209	76	2.3	77	85	1	239	36	17	19	26	1.94
90973--91086	29	4.0	28	80	10	108	25	20	7	46	1.77
90973--91086	56	2.0	57	84	5	151	25	20	7	46	1.77
92223--92253	13	2.4	13	94	0	53	41	0	3	54	1.16
95058--95089	15	2.1	15	100	0	64	12	12	21	53	1.71
95268--95311	12	3.7	12	84	6	54	20	20	20	38	1.94
97817--97871	21	2.6	21	100	0	110	12	18	25	43	1.85
98002--98062	30	2.0	30	90	0	95	26	11	27	34	1.91
97959--98109	73	2.0	74	83	5	189	29	16	24	29	1.97
98032--98179	43	3.4	43	85	3	215	33	19	21	25	1.97
101783--101809	6	4.5	6	100	0	54	70	14	0	14	1.17
102076--102336	41	6.3	41	80	2	272	37	19	16	26	1.93
102117--102358	125	1.9	125	83	1	306	35	19	16	27	1.94
103251--103275	2	12.5	2	100	0	50	48	0	0	52	1.00
104329--104364	17	2.1	17	89	5	54	19	8	0	72	1.10
104604--104636	16	2.1	16	94	0	57	57	21	12	9	1.62
104702--104760	16	3.7	16	90	0	100	57	20	11	10	1.63
105507--105554	10	4.4	10	78	19	51	54	22	12	10	1.68
105514--105569	14	4.3	13	78	21	64	51	23	14	10	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105494--105562	24	2.9	24	91	4	104	55	18	13	13	1.69
108056--108103	21	2.3	21	82	7	62	58	8	4	29	1.46
108157--108197	13	3.1	13	89	3	55	70	2	0	26	0.99
108157--108195	19	2.0	20	85	14	55	71	2	0	25	0.98
108584--108626	21	2.0	21	86	0	59	34	13	25	25	1.93
110967--111044	30	2.5	31	95	2	140	35	21	33	8	1.85
110967--111054	30	2.9	30	86	5	97	37	22	31	7	1.83
111287--111366	24	3.3	24	98	0	151	37	17	17	27	1.92
112555--112583	14	2.0	15	93	6	51	68	0	6	24	1.13
126585--126616	14	2.3	14	100	0	64	37	0	12	50	1.41
130097--130166	7	9.3	7	75	18	61	78	0	15	5	0.93
130125--130176	8	6.6	8	78	10	54	82	0	11	5	0.82
130125--130176	15	3.3	15	83	5	68	82	0	11	5	0.82
131099--131337	53	4.4	55	87	2	299	31	15	26	27	1.95
131322--131742	54	8.0	51	82	10	397	33	17	23	25	1.96
131482--131792	54	5.8	55	84	5	232	33	17	24	24	1.96
131269--131742	54	8.9	52	80	9	392	33	17	24	25	1.97
131325--131793	108	4.4	107	77	9	388	33	17	24	24	1.96

Tables:   1

The End!