genome.fa.s1095.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001095.1 Hibiscus syriacus cultivar Beakdansim tig00002169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  842675

Tables:   1   2   3   4   

This is table  4  of  4  ( 410 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731327--731532	42	4.8	41	88	5	261	17	24	24	33	1.97
737587--737620	18	1.9	17	94	5	59	17	44	23	14	1.86
737638--737782	29	5.0	29	81	6	161	33	4	21	40	1.74
737638--737782	57	2.5	58	80	9	156	33	4	21	40	1.74
738708--738828	42	2.9	42	92	3	190	17	22	26	33	1.96
739467--739508	18	2.3	18	91	0	66	52	16	9	21	1.72
739476--739513	18	2.1	18	100	0	76	44	21	10	23	1.83
745012--745068	28	2.0	28	83	12	73	38	5	10	45	1.61
749948--749999	21	2.5	21	93	0	86	25	23	19	32	1.97
754147--754324	89	2.0	89	100	0	356	37	15	11	35	1.84
757967--757997	13	2.4	13	100	0	62	35	6	29	29	1.82
763678--763724	13	3.6	13	85	0	67	36	14	19	29	1.92
763670--763724	26	2.1	26	82	0	65	40	14	18	27	1.89
764392--764479	21	4.2	21	83	0	113	38	7	25	28	1.84
772777--772815	17	2.2	18	86	4	53	41	12	12	33	1.82
775701--775772	28	2.6	26	81	12	81	66	11	20	1	1.30
776604--776646	17	2.7	15	80	16	50	18	9	2	69	1.26
776645--776689	23	2.0	23	82	8	56	33	8	0	57	1.30
782264--782306	17	2.5	16	85	11	50	83	0	16	0	0.64
782272--782300	10	2.7	11	89	10	51	89	0	10	0	0.48
784608--784784	93	1.9	93	96	0	327	29	13	20	36	1.91
784737--785108	105	3.5	105	89	6	582	31	14	19	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
784784--785145	114	3.3	114	90	3	553	35	14	19	30	1.92
786050--786116	35	1.9	35	85	11	93	32	14	20	31	1.93
787197--787362	54	3.1	54	92	0	269	37	16	23	22	1.93
787711--787789	22	3.6	22	84	0	95	35	15	12	36	1.85
788227--788869	113	5.6	112	81	8	782	38	13	18	28	1.89
788327--788957	123	5.4	120	78	11	620	39	13	18	28	1.89
788227--788907	112	6.0	110	71	17	364	38	13	18	28	1.89
788850--789161	102	3.0	102	73	15	302	39	15	17	27	1.90
789672--789743	28	2.6	26	81	12	81	66	11	20	1	1.30
790616--790660	23	2.0	23	82	8	56	33	8	0	57	1.30
792301--792351	17	3.0	17	88	0	75	47	0	11	41	1.40
796725--796749	13	1.9	13	100	0	50	24	0	0	76	0.80
796997--797040	17	2.6	17	89	3	63	34	6	13	45	1.70
797008--797040	17	1.9	17	100	0	66	30	6	12	51	1.63
797740--797781	3	13.7	3	90	5	66	33	2	0	64	1.07
798714--798754	15	2.8	15	96	3	75	60	0	26	12	1.31
807441--807477	11	3.5	11	89	10	51	24	2	0	72	0.97
811022--811073	15	3.6	14	77	10	52	82	0	15	1	0.75
811029--811073	18	2.5	17	86	10	63	84	0	15	0	0.62
811021--811066	7	7.0	7	82	9	53	82	0	15	2	0.76
811029--811082	18	3.1	16	84	10	54	83	1	12	1	0.81
811022--811070	25	2.0	25	92	4	82	83	0	14	2	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
811029--811082	25	2.2	25	86	6	74	83	1	12	1	0.81
813601--813637	19	1.9	19	88	0	56	29	24	10	35	1.89
826095--826142	23	2.2	21	82	14	53	37	2	0	60	1.09
835036--835078	20	2.2	20	83	8	52	37	25	6	30	1.82
839092--839121	14	2.1	15	93	6	53	50	3	0	46	1.18
839156--839203	23	2.1	23	88	0	69	45	0	2	52	1.12

Tables:   1   2   3   4

The End!