Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000110.1 Hibiscus syriacus cultivar Beakdansim tig00000194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66460

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6775--6893
39
3.1
39
77
12
129
36
16
0
45
1.54
7423--7505
24
3.5
24
93
1
132
25
15
16
42
1.88
7423--7509
12
7.3
12
66
12
54
24
16
17
42
1.88
8080--8125
17
2.6
18
89
3
67
32
10
23
32
1.90
8494--9114
256
2.4
252
83
12
790
40
21
12
25
1.88
9508--9636
30
4.4
30
82
9
151
35
21
28
13
1.92
9506--9636
58
2.3
58
90
2
219
35
22
28
13
1.93
11643--11688
21
2.1
23
88
8
69
28
28
23
19
1.98
12491--12547
21
2.7
20
84
10
78
22
26
21
29
1.99
12614--12647
18
1.9
17
88
5
50
17
20
5
55
1.62
12817--12844
2
14.0
2
100
0
56
50
0
0
50
1.00
14407--14607
102
2.0
104
86
2
289
21
12
18
46
1.82
24424--24461
11
3.7
10
86
13
51
55
0
44
0
0.99
24741--24773
2
17.0
2
93
6
59
51
0
0
48
1.00
24762--24829
29
2.3
30
80
7
77
54
1
0
44
1.09
27114--27186
36
2.0
36
100
0
146
21
27
8
42
1.81
27540--27609
3
23.7
3
85
8
99
37
0
0
62
0.95
29068--29152
30
2.7
31
80
12
95
18
10
5
64
1.44
37187--37253
32
2.1
32
85
0
89
22
19
13
44
1.85
37187--37253
16
4.2
16
86
0
80
22
19
13
44
1.85
37430--37487
22
2.4
25
88
11
86
58
0
3
37
1.15
37511--37557
14
3.7
14
71
26
50
44
0
4
51
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37510--37559
23
2.1
24
96
3
93
48
0
4
48
1.20
40854--40997
31
4.7
28
75
20
119
52
1
1
45
1.18
40946--41019
31
2.5
30
83
14
100
51
1
2
44
1.24
40898--41092
88
2.3
84
80
16
201
49
3
3
43
1.37
40993--41046
21
2.6
21
73
8
56
42
5
5
46
1.50
41074--41173
22
4.7
21
75
14
71
50
9
6
35
1.59
41214--41262
24
2.0
24
84
0
62
46
4
8
40
1.52
41485--41531
13
3.5
13
88
5
67
40
4
6
48
1.48
41488--41557
28
2.5
26
81
9
68
44
7
4
44
1.51
41544--41601
18
3.2
17
85
9
71
48
3
5
43
1.42
41676--41723
24
2.0
24
88
8
71
43
10
6
39
1.64
41702--41736
18
1.9
18
100
0
70
40
8
11
40
1.72
42588--42647
12
5.0
12
76
8
68
46
18
16
18
1.84
42574--42682
48
2.3
48
85
6
141
49
15
16
18
1.80
42574--42682
24
4.5
24
80
6
123
49
15
16
18
1.80
45999--46032
2
16.0
2
88
11
50
47
2
2
47
1.32
46061--46173
18
5.6
18
66
22
64
38
11
8
41
1.73
46045--46196
42
3.6
42
93
0
250
40
11
8
39
1.73
46079--46155
24
3.5
24
67
20
67
40
11
7
40
1.71
46088--46153
16
4.5
15
71
24
52
40
12
7
39
1.71
46390--46438
24
1.9
26
84
12
66
46
6
2
44
1.39
46473--53403
4
1752.0
4
90
2
10530
49
27
0
22
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53444--53491
13
3.5
13
88
5
69
39
2
8
50
1.44
53501--53551
18
2.8
18
85
5
68
50
1
5
41
1.37
53464--53653
98
2.0
97
91
2
310
44
4
5
45
1.47
53605--53687
2
43.5
2
69
21
54
45
0
3
50
1.19
53607--53667
18
3.3
18
84
11
88
45
0
4
49
1.23
53467--53680
96
2.2
96
86
4
290
45
3
5
45
1.43
53465--53684
98
2.2
96
87
4
289
45
3
5
45
1.42
53633--53685
17
3.1
17
77
20
56
47
0
1
50
1.12
55061--55089
2
14.5
2
100
0
58
48
0
0
51
1.00
55136--55218
26
3.4
25
73
20
93
32
8
2
56
1.42
55153--55227
22
3.2
21
69
29
55
32
6
1
60
1.31
55125--55226
48
2.1
48
96
1
186
31
8
1
57
1.40
56303--56337
2
17.5
2
100
0
70
51
0
0
48
1.00
59973--60002
10
2.9
10
95
5
51
3
6
10
80
1.01
60624--60696
35
2.1
35
94
0
128
42
16
27
13
1.86
66299--66397
43
2.3
43
96
0
180
41
14
14
30
1.85

Tables:   1

The End!