Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001113.1 Hibiscus syriacus cultivar Beakdansim tig00002196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63113

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8301--8363
18
3.4
18
76
21
60
4
17
1
76
1.04
8286--8357
32
2.2
32
81
13
85
8
15
1
75
1.11
23241--23269
15
1.9
15
100
0
58
48
27
6
17
1.72
23381--23766
183
2.1
184
90
3
602
42
3
8
45
1.51
24554--24578
2
12.5
2
100
0
50
52
0
0
48
1.00
24572--24617
13
3.3
14
88
11
76
47
6
6
39
1.55
24570--24619
15
3.4
15
86
13
77
48
6
6
40
1.52
30614--30811
90
2.2
92
88
4
285
28
26
25
19
1.99
36784--36916
15
8.5
15
83
11
169
45
0
2
51
1.13
36784--36942
30
5.0
30
81
13
176
45
0
4
50
1.21
36784--36942
45
3.3
45
78
14
176
45
0
4
50
1.21
36859--36961
22
4.5
22
69
7
89
39
0
9
50
1.35
36896--37213
32
10.4
32
68
22
186
34
0
12
52
1.44
36814--36970
69
2.3
67
89
5
237
42
0
6
50
1.27
36896--37411
54
9.4
54
79
15
505
34
0
12
52
1.42
36973--37015
22
2.0
22
95
0
77
34
0
11
53
1.37
36941--37396
166
2.7
166
91
2
702
33
0
13
52
1.44
36896--37411
220
2.3
219
87
5
749
34
0
12
52
1.42
37184--37231
22
2.4
18
73
23
51
33
0
14
52
1.42
37240--37379
32
4.7
32
79
16
174
34
0
12
52
1.40
37273--37315
22
2.0
22
100
0
86
34
0
13
51
1.42
37359--37401
22
2.0
22
100
0
86
34
0
13
51
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37771--37821
24
2.1
24
96
0
93
23
19
13
43
1.87
41864--41912
18
3.1
15
82
11
55
30
0
2
67
1.02
43821--44186
132
2.8
131
86
3
511
30
12
17
39
1.86
51112--51172
20
2.9
20
87
7
77
21
36
26
16
1.94
51134--51193
21
2.8
20
85
10
66
23
35
26
15
1.94
59873--59897
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!