genome.fa.s1116.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001116.1 Hibiscus syriacus cultivar Beakdansim tig00002208_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53774

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141--178	17	2.2	17	90	0	58	36	18	5	39	1.73
3852--3899	25	2.0	25	83	4	62	31	8	2	58	1.39
6192--6262	33	2.2	33	92	0	115	33	14	18	33	1.90
8914--8938	5	5.0	5	100	0	50	20	40	20	20	1.92
12264--12299	18	2.0	18	100	0	72	33	16	27	22	1.95
17762--17832	29	2.4	29	100	0	142	36	2	0	60	1.11
17749--17832	29	2.8	32	90	9	108	40	3	0	55	1.17
18754--18782	12	2.3	13	94	5	51	34	13	0	51	1.42
20014--20042	2	14.5	2	100	0	58	48	0	0	51	1.00
24194--24231	20	1.9	20	100	0	76	47	0	13	39	1.42
24293--24365	19	3.7	20	82	7	69	32	9	17	39	1.82
27159--27802	321	2.0	321	94	1	1123	41	9	6	42	1.64
36307--36340	17	2.0	17	88	11	52	17	29	35	17	1.93
36920--36957	20	1.9	20	84	10	51	50	0	5	44	1.24
39905--40006	20	5.2	20	67	4	82	46	17	1	34	1.60
39904--40020	39	3.0	39	94	0	207	47	18	2	31	1.63
39964--40020	19	2.9	19	66	5	51	50	19	3	26	1.63
40166--40202	20	2.0	19	85	15	51	62	8	5	24	1.44
43271--43341	35	2.0	35	97	0	133	26	8	35	29	1.86
43707--43757	23	2.2	22	86	10	75	60	0	0	39	0.97
43767--43824	22	2.6	22	78	7	73	65	6	0	27	1.18
43767--43824	23	2.6	22	81	5	73	65	6	0	27	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46103--46246	78	1.8	78	89	0	225	22	14	21	41	1.89
46377--46443	20	3.3	20	83	8	82	32	10	29	26	1.90
48416--48492	37	2.1	37	95	0	136	24	22	9	44	1.81

Tables:   1

The End!