genome.fa.s1134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001134.1 Hibiscus syriacus cultivar Beakdansim tig00002261_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206115

Tables:   1   2   

This is table  1  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5819--5856	19	2.0	19	100	0	76	31	21	26	21	1.98
5819--5872	19	2.8	19	88	5	65	31	20	27	20	1.97
6345--6413	30	2.3	30	90	5	104	39	4	24	31	1.75
6632--6722	23	4.0	23	83	0	101	21	25	23	29	1.99
8227--8284	27	2.1	28	87	3	82	51	5	5	37	1.46
8577--8622	15	3.1	15	93	3	76	6	39	0	54	1.26
8582--8623	14	2.9	14	96	3	75	7	40	0	52	1.29
22677--22746	15	5.1	14	73	21	51	50	0	0	50	1.00
22663--22742	38	2.2	37	86	4	108	47	0	0	52	1.00
36413--36457	21	2.1	21	84	8	56	33	26	24	15	1.95
37037--37071	18	1.9	18	88	11	54	54	5	17	22	1.64
37128--37170	22	2.0	22	86	4	61	44	0	23	32	1.54
38055--38358	149	2.0	149	96	0	563	28	17	20	33	1.95
38337--38381	23	2.0	23	86	0	63	20	24	28	26	1.99
46581--46652	35	2.1	35	82	10	85	45	2	2	48	1.31
48951--49048	21	4.8	20	76	10	74	37	21	19	21	1.94
49016--49244	20	11.4	20	83	3	237	37	25	17	19	1.94
49937--49983	24	2.0	24	87	8	69	25	14	21	38	1.92
50158--50182	12	2.1	12	100	0	50	72	0	28	0	0.86
52466--52677	33	6.2	33	77	15	175	45	17	21	15	1.85
52480--52645	53	3.2	53	88	5	257	46	16	21	15	1.84
52508--52645	19	7.7	20	74	19	126	46	15	22	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52466--52683	86	2.5	88	84	10	281	44	17	22	15	1.86
52605--52659	14	3.6	14	73	21	56	45	20	23	10	1.82
52692--52770	19	4.4	19	80	16	105	13	22	17	45	1.84
52877--52913	14	2.6	14	91	0	65	45	21	0	32	1.52
54836--55008	19	9.6	19	78	12	159	45	23	20	10	1.81
54930--54986	14	3.7	14	75	20	51	43	22	22	10	1.84
54911--55003	33	2.8	33	95	0	168	46	21	21	10	1.81
54870--55008	52	2.7	52	74	8	147	46	23	21	9	1.80
55020--55046	14	1.9	14	100	0	54	7	14	29	48	1.71
55004--55107	33	3.2	32	90	2	145	7	18	26	47	1.75
55004--55095	19	5.4	18	73	24	83	7	16	27	48	1.72
55155--55530	93	4.1	93	98	0	727	46	18	12	22	1.83
57221--57277	14	3.7	14	75	20	60	43	22	24	8	1.81
57213--57293	33	2.5	33	97	2	155	46	19	23	9	1.80
57235--57298	18	3.7	19	72	21	68	43	21	23	10	1.84
57321--57394	21	3.5	21	80	7	96	14	20	17	47	1.83
57474--57544	33	2.2	33	92	0	115	49	16	22	11	1.78
57926--58116	20	9.5	20	82	5	224	18	18	27	35	1.95
58110--58159	21	2.4	20	80	9	55	26	18	20	36	1.95
60204--60240	19	1.9	19	88	0	56	37	10	18	32	1.86
60213--60252	18	2.2	19	90	4	64	35	10	22	32	1.87
65041--65087	3	15.3	3	91	4	76	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65041--65091	12	4.2	12	92	2	84	29	0	0	70	0.87
66178--66226	14	3.4	14	83	8	55	63	0	0	36	0.95
66176--66276	20	5.4	19	72	19	56	61	0	2	35	1.11
66348--66380	2	16.5	2	100	0	66	51	0	0	48	1.00
67010--67102	37	2.5	37	85	0	114	31	12	13	41	1.83
67864--69138	106	12.0	106	91	0	1942	22	17	24	34	1.96
70100--70154	22	2.5	22	100	0	110	23	12	27	36	1.91
74966--75010	21	2.1	21	87	0	63	31	28	24	15	1.96
76694--76899	103	2.0	103	94	0	358	28	13	22	35	1.92
76702--76922	103	2.1	103	90	1	345	29	12	22	36	1.90
76923--76990	23	3.0	23	86	0	91	20	26	26	26	1.99
79967--80011	21	2.1	21	87	0	63	31	28	24	15	1.96
81693--81898	103	2.0	103	93	0	349	27	13	23	35	1.92
81701--81921	103	2.1	103	89	1	336	28	12	22	36	1.90
81922--81989	23	3.0	23	91	0	100	20	27	26	25	1.99
83647--83846	30	6.9	27	70	19	113	62	2	3	32	1.24
84399--84477	37	2.1	37	95	4	142	37	7	7	46	1.61
85276--85327	21	2.5	21	84	6	70	19	0	5	75	1.01
85261--85338	37	2.1	37	86	6	106	17	1	7	73	1.14
89143--89354	106	2.0	104	85	9	286	33	23	20	23	1.97
90111--90167	15	3.5	15	71	17	51	22	22	14	40	1.90
90096--90209	34	3.1	35	85	10	158	28	20	13	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90109--90161	15	3.1	17	72	17	56	22	22	13	41	1.88
90284--90446	84	1.9	84	88	0	245	32	23	20	22	1.98
90689--90754	6	10.5	6	81	4	60	25	1	0	72	0.93
90689--90754	12	5.2	12	83	5	78	25	1	0	72	0.93
91969--92017	22	2.3	21	82	6	55	22	2	4	71	1.13
92007--92033	4	6.8	4	100	0	54	25	0	0	74	0.83
91968--92020	21	2.6	19	77	14	52	22	1	3	71	1.12
92005--92048	16	2.8	15	83	16	54	25	2	0	72	0.96
96572--96600	11	2.6	11	100	0	58	75	0	24	0	0.80
105545--105612	27	2.5	27	87	0	100	20	20	45	13	1.84
107292--107343	8	6.1	9	73	13	56	63	1	1	32	1.16
107289--107341	16	3.2	17	84	10	65	66	1	1	30	1.13
107295--107344	17	3.0	17	91	2	75	60	4	2	34	1.27
107693--107755	29	2.1	29	82	2	72	25	12	30	31	1.93
108220--108287	31	2.2	31	84	5	84	38	7	0	54	1.28
109658--109780	59	2.1	59	81	6	142	39	19	12	29	1.88
112725--112769	3	15.3	3	81	4	56	66	4	0	28	1.11
112768--112797	3	10.0	3	100	0	60	33	0	0	66	0.92
114125--114173	24	2.0	24	84	0	62	48	18	10	22	1.77
114131--114215	24	3.5	24	77	3	73	45	16	12	24	1.82
115972--116073	29	3.5	29	86	2	150	30	20	25	23	1.99
118149--118198	24	2.1	24	88	7	75	58	14	2	26	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123778--123827	24	2.1	24	88	7	75	58	14	2	26	1.47
125180--125204	13	1.9	13	100	0	50	40	12	0	48	1.40
125379--125463	24	3.5	24	80	0	71	41	16	17	24	1.90
125894--125967	30	2.5	30	88	0	112	31	20	27	21	1.98
126770--126808	19	2.1	19	90	0	60	23	38	12	25	1.90
126756--126918	65	2.5	65	84	3	213	30	26	15	26	1.96
132715--132810	44	2.2	44	79	9	106	28	22	19	29	1.98
134335--134373	19	2.1	19	95	0	69	20	38	15	25	1.92
134321--134483	65	2.5	65	85	3	222	30	26	15	26	1.96
135814--135877	32	2.0	32	90	0	101	29	28	15	26	1.96
136990--137030	20	2.0	20	86	9	57	0	21	4	73	1.02
140465--140505	5	8.2	5	88	0	64	78	4	0	17	0.93
142454--142495	3	14.3	3	95	5	77	66	0	0	33	0.92
143397--143439	20	2.0	21	82	8	52	32	4	0	62	1.15
144473--144594	51	2.4	51	84	2	147	15	33	27	23	1.95
148159--148245	35	2.5	34	80	12	97	55	10	8	26	1.61
148468--148529	3	20.7	3	75	6	54	4	29	25	40	1.76
148468--148529	24	2.6	24	84	5	72	4	29	25	40	1.76
151399--151515	60	2.0	57	83	5	144	39	19	12	28	1.89
151772--151798	2	13.5	2	100	0	54	51	0	0	48	1.00
152449--152571	59	2.1	59	81	6	142	37	21	13	28	1.90
154245--154284	21	1.9	21	85	10	55	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156044--156092	18	2.8	17	78	6	53	55	2	2	40	1.23
169186--169225	21	1.9	21	89	0	62	27	10	10	52	1.66
169312--169408	37	2.6	37	86	0	122	40	14	10	35	1.80
169823--169854	10	3.4	10	87	12	50	31	0	0	68	0.90
169895--169949	3	16.3	3	96	3	56	40	0	0	60	0.97
169901--169949	16	3.5	14	84	15	66	40	0	0	59	0.98
169919--169945	2	13.5	2	100	0	54	48	0	0	51	1.00
169966--169991	13	2.0	13	100	0	52	23	7	0	69	1.14
170111--170180	27	2.5	27	77	15	70	28	2	1	67	1.14
170147--170190	22	2.0	23	86	8	65	25	2	0	72	0.96

Tables:   1   2