genome.fa.s1158.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001158.1 Hibiscus syriacus cultivar Beakdansim tig00002309_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88141

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1814--1858	21	2.1	22	91	4	74	26	26	20	26	1.99
3375--3458	30	2.9	28	75	10	78	36	15	4	42	1.68
8570--8594	12	2.1	12	100	0	50	84	8	0	8	0.79
11357--11403	18	2.6	19	83	16	64	63	2	2	31	1.18
12892--12939	21	2.3	21	85	0	60	35	18	12	33	1.89
12901--12945	21	2.1	21	87	0	63	37	22	8	31	1.85
24582--24615	2	17.0	2	100	0	68	50	0	0	50	1.00
24988--25018	16	1.9	16	93	0	53	54	3	3	38	1.32
25023--25068	20	2.3	21	81	11	60	58	0	8	32	1.28
26493--26571	3	26.7	3	74	7	63	59	1	1	37	1.14
26889--27556	124	5.6	124	87	5	766	28	19	14	38	1.90
27272--27580	112	2.8	114	91	3	504	29	19	13	37	1.90
27591--27848	76	3.4	76	92	1	401	33	20	19	25	1.97
28520--28640	22	5.5	22	92	0	206	38	14	13	33	1.85
29075--29163	46	1.9	46	86	4	126	28	24	11	35	1.90
33556--33589	7	4.9	7	86	13	52	0	11	0	88	0.52
33549--33591	14	2.9	15	82	6	61	0	16	0	83	0.64
33549--33589	21	2.0	21	95	0	73	0	14	0	85	0.60
33549--33591	8	5.8	8	86	10	56	0	16	0	83	0.64
33554--33600	21	2.2	21	85	7	60	0	17	0	82	0.66
35621--35662	7	6.0	7	78	10	50	54	14	16	14	1.71
37691--37732	11	3.3	13	80	12	52	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38143--38188	20	2.3	21	81	11	60	58	0	8	32	1.28
39424--39502	3	26.7	3	74	7	63	59	1	1	37	1.14
42302--42372	21	3.4	21	67	18	67	15	21	25	38	1.92
42299--42477	41	4.4	41	88	5	272	15	20	25	38	1.92
42364--42474	20	5.4	20	71	12	82	15	20	25	38	1.92
44783--44839	21	2.5	24	86	11	75	28	1	3	66	1.18
49908--49934	2	13.5	2	100	0	54	0	48	0	51	1.00
50037--50120	41	2.0	41	86	0	114	32	19	17	30	1.95
54484--54537	28	1.9	28	81	7	65	53	11	9	25	1.66
55862--55895	3	10.7	3	87	12	50	61	0	0	38	0.96
56109--56186	30	2.7	29	70	4	66	38	17	14	29	1.89
58108--58196	40	2.2	40	84	6	108	31	8	16	42	1.79
58048--58623	101	5.6	101	75	13	412	28	9	14	47	1.75
58209--58299	42	2.2	42	92	2	148	29	8	17	43	1.79
58294--58359	20	3.3	20	79	8	89	24	4	15	56	1.58
58108--58468	143	2.5	143	82	4	408	29	8	14	47	1.74
58296--58374	40	2.0	40	89	0	122	26	6	12	54	1.62
58352--58458	42	2.6	42	82	5	139	31	8	10	49	1.67
58205--58519	143	2.2	142	83	6	377	28	8	13	48	1.72
58497--58536	20	2.0	21	90	5	64	22	7	15	55	1.65
58393--58580	62	3.0	62	82	4	247	29	10	11	48	1.72
58516--58606	42	2.2	41	84	2	119	30	9	13	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61805--61841	2	18.5	2	100	0	74	51	0	0	48	1.00
62003--62060	12	4.8	12	82	0	71	51	18	15	13	1.76
62015--62097	24	3.5	24	78	3	87	44	18	18	19	1.87
64570--64598	15	1.9	15	100	0	58	24	27	34	13	1.93
64587--64625	18	2.2	18	100	0	78	10	20	51	17	1.74
66197--66252	15	3.7	15	79	9	69	60	8	7	23	1.51
68222--68383	40	4.1	40	95	0	288	33	25	16	24	1.95
79686--79752	34	1.9	36	87	6	102	50	5	1	41	1.36
80973--81010	3	13.0	3	94	5	69	68	0	0	31	0.90
80977--81019	15	3.1	14	90	9	63	74	0	0	25	0.82
81252--81557	123	2.5	123	87	2	427	26	19	15	38	1.91
81523--81583	26	2.3	26	94	0	113	19	24	8	47	1.76
81399--81707	150	2.1	150	90	2	487	23	20	15	40	1.90
81549--81993	124	3.6	124	93	0	757	25	19	15	39	1.91
81277--81831	274	2.0	273	89	4	852	24	20	15	39	1.91
84795--84850	2	28.0	2	100	0	112	50	0	0	50	1.00
84874--84920	23	2.0	24	83	8	60	34	2	6	57	1.36

Tables:   1

The End!