Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001175.1 Hibiscus syriacus cultivar Beakdansim tig00002341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212349

Tables:   1   2   

This is table  2  of  2  ( 161 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127622--127727
49
2.1
51
94
3
189
26
4
3
65
1.30
127622--127743
49
2.5
48
87
10
158
26
4
3
65
1.28
134423--134472
9
5.3
9
85
7
64
14
30
30
26
1.94
134423--134472
19
2.7
18
90
9
82
14
30
30
26
1.94
134469--134538
5
12.8
5
74
16
59
18
50
22
8
1.74
134468--134545
17
4.3
17
84
15
111
17
47
23
11
1.80
134469--134552
22
4.0
22
80
17
106
17
46
23
11
1.82
141739--141817
10
8.3
9
80
9
86
15
29
29
26
1.96
141738--141815
19
4.1
19
82
14
97
16
26
29
26
1.97
141719--141817
29
3.4
28
86
5
117
17
28
27
27
1.97
141814--141883
5
12.8
5
74
16
59
18
50
22
8
1.74
141813--141890
17
4.3
17
84
15
111
17
47
23
11
1.80
141814--141897
22
4.0
22
80
17
106
17
46
23
11
1.82
166912--166973
3
20.7
3
96
0
115
64
0
1
33
1.03
167109--167869
228
3.3
227
89
3
1089
29
20
13
36
1.91
167109--167852
116
6.5
113
92
3
1003
29
20
13
36
1.91
168602--169077
83
5.7
83
91
2
787
36
22
13
27
1.92
168604--169079
166
2.9
166
96
1
875
36
22
13
27
1.92
170125--170199
1
75.0
1
71
0
51
4
10
0
85
0.73
170114--170202
16
5.5
16
82
6
108
3
13
0
83
0.78
170110--170199
10
9.1
9
73
21
65
3
13
0
83
0.77
170109--170200
33
2.8
32
85
8
132
3
15
0
81
0.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
170114--170199
25
3.2
25
79
14
84
3
12
0
83
0.76
180799--180835
15
2.7
15
88
12
53
62
8
5
24
1.44
180826--180876
18
2.9
17
75
16
50
72
1
0
25
0.95
181606--181644
20
2.0
20
84
0
51
69
12
0
17
1.19
183044--183111
3
22.7
3
96
0
127
64
0
1
33
1.02
184811--184848
9
4.3
9
90
3
60
78
0
7
13
0.94
189459--189500
2
21.0
2
100
0
84
50
0
0
50
1.00
191871--192038
58
2.9
58
87
5
225
38
13
17
30
1.88
193857--193903
6
7.7
6
81
13
51
46
0
19
34
1.50
197098--197129
11
2.8
11
95
4
55
43
0
0
56
0.99
197125--197204
3
26.7
3
94
0
142
63
0
2
33
1.08
197519--198064
113
4.8
113
93
0
896
28
19
13
38
1.90
198654--199209
83
6.7
83
96
1
1012
37
22
11
28
1.89
198657--199209
165
3.4
164
95
2
975
37
22
11
28
1.89
198657--199209
247
2.2
248
96
0
1020
37
22
11
28
1.89
200327--200369
11
3.8
11
80
14
52
0
16
0
83
0.64
200328--200369
9
4.9
9
80
8
52
0
14
0
85
0.59
200334--200369
18
2.0
18
94
0
63
0
13
0
86
0.58
203869--203902
10
3.4
10
95
0
59
67
0
8
23
1.18

Tables:   1   2

The End!