genome.fa.s1178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001178.1 Hibiscus syriacus cultivar Beakdansim tig00002344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55896

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4471--4528	2	29.0	2	100	0	116	50	0	0	50	1.00
11623--11665	21	2.0	21	86	8	61	25	27	23	23	2.00
14620--14645	10	2.6	10	100	0	52	46	34	11	7	1.69
19578--19617	15	2.6	16	84	8	55	72	0	5	22	1.04
19626--19673	24	1.9	26	83	8	64	54	6	2	37	1.38
19626--19673	25	1.9	25	83	8	62	54	6	2	37	1.38
19691--19826	38	3.8	35	77	17	129	45	6	4	43	1.50
19778--19841	26	2.6	24	78	9	67	48	7	1	42	1.41
19812--19841	15	1.9	16	93	6	53	53	6	0	40	1.27
19794--19877	25	3.2	26	76	15	84	45	5	3	45	1.45
19828--19950	33	3.4	37	71	18	107	43	6	5	43	1.53
19707--20078	123	3.0	124	94	4	637	44	6	5	44	1.52
19951--20153	37	5.4	37	77	10	182	44	6	4	44	1.49
20018--20175	74	2.2	71	82	7	183	46	7	3	43	1.48
20050--20176	37	3.5	34	77	11	101	47	7	3	41	1.48
20769--21398	81	7.7	81	76	4	611	23	22	25	29	1.99
20766--21357	164	3.6	164	95	0	1033	24	21	24	29	1.99
25396--25427	16	1.9	17	93	6	57	71	6	15	6	1.26
27905--28043	36	3.8	35	78	11	145	45	6	4	43	1.49
27995--28059	27	2.6	23	78	11	67	47	7	1	43	1.41
27993--28096	28	3.9	25	71	18	77	45	5	3	45	1.45
28029--28058	15	1.9	16	93	6	53	53	6	0	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28069--28172	36	2.8	38	77	15	103	45	6	4	43	1.51
28045--28375	37	8.4	38	69	18	171	44	6	4	44	1.51
28157--28186	15	1.9	16	93	6	53	53	6	0	40	1.27
27921--28300	128	3.0	128	97	1	714	43	6	5	44	1.52
28173--28375	37	5.4	37	78	10	191	44	6	4	44	1.51
28240--28397	74	2.2	71	82	7	183	46	7	3	43	1.48
28272--28398	37	3.5	34	77	11	101	47	7	3	41	1.48
30140--30170	3	10.3	3	100	0	62	32	32	0	35	1.58
32056--32091	18	2.0	18	100	0	72	22	11	5	61	1.50
34416--34464	24	2.0	24	96	0	89	34	12	10	42	1.76
34708--34761	21	2.6	21	81	0	63	31	20	27	20	1.97
34843--34957	61	1.9	61	90	0	185	25	14	28	31	1.95
34986--35029	18	2.4	18	92	0	70	22	4	29	43	1.73
35787--35878	46	2.0	46	97	2	177	35	2	25	36	1.68
46973--47075	35	2.9	36	82	7	138	32	3	19	44	1.69
51599--51659	21	3.2	21	65	29	64	32	3	21	42	1.69
51591--51699	35	3.0	36	90	5	175	30	4	20	44	1.71

Tables:   1

The End!