genome.fa.s1187.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001187.1 Hibiscus syriacus cultivar Beakdansim tig00002355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75003

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6087--6117	16	1.9	16	100	0	62	6	64	6	22	1.40
15008--15085	31	2.5	31	93	0	138	41	14	16	28	1.87
24977--25197	64	3.5	64	83	2	248	34	19	18	27	1.95
25505--25540	12	3.0	12	91	0	63	33	5	25	36	1.79
25505--25573	24	2.8	26	83	12	85	37	5	24	31	1.79
25684--25713	15	2.0	15	100	0	60	20	20	26	33	1.97
31762--31978	64	3.4	64	82	2	213	35	19	17	28	1.94
32287--32344	12	5.0	11	82	12	64	37	1	25	34	1.67
32466--32498	15	2.2	15	100	0	66	15	18	33	33	1.92
33152--33211	31	1.9	31	89	0	93	35	8	15	41	1.77
37865--37898	14	2.3	15	90	5	52	38	11	5	44	1.65
48304--48328	13	1.9	13	100	0	50	40	12	24	24	1.88
52289--52359	37	1.9	37	91	0	115	39	14	12	33	1.83
52953--53005	29	1.9	28	85	11	74	37	7	0	54	1.29
53140--53191	19	2.7	19	74	8	52	15	7	3	73	1.21
53284--53342	26	2.3	25	82	5	64	11	15	3	69	1.31
53325--53354	15	2.1	15	93	6	53	13	3	0	83	0.77
54973--56231	418	3.0	418	96	0	2295	33	18	16	31	1.93
57020--57090	10	6.7	10	75	15	54	80	4	11	4	1.00
57026--57089	25	2.7	25	79	13	73	81	3	10	4	0.96
57020--57090	21	3.3	21	75	12	65	80	4	11	4	1.00
58748--58863	36	3.2	36	91	1	187	30	18	12	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58748--59037	72	4.1	71	74	11	290	28	18	12	39	1.88
58952--59016	21	3.4	20	68	24	59	26	21	10	41	1.86
58930--59037	36	3.0	36	91	0	171	25	19	12	42	1.87
58756--59209	174	2.6	174	91	0	730	26	19	13	40	1.88
58950--59138	101	1.9	102	85	3	265	26	19	12	41	1.87
59052--59209	37	4.4	36	87	4	230	24	20	14	40	1.90
59052--59209	72	2.2	73	90	2	248	24	20	14	40	1.90
59200--59276	35	2.2	35	90	2	120	44	16	7	31	1.77
60101--60171	37	1.9	37	88	0	106	38	14	12	35	1.84
60631--60695	20	3.3	20	71	23	57	20	13	0	66	1.25
60823--60886	3	21.3	3	73	12	51	23	3	3	70	1.16
61091--61148	26	2.2	26	84	6	73	13	15	3	67	1.36
61906--61941	15	2.2	17	90	9	58	27	0	13	58	1.36
65010--65035	11	2.4	11	100	0	52	65	0	0	34	0.93
65199--65250	2	27.0	2	92	7	90	51	0	0	48	1.00
66908--66943	18	1.9	19	88	5	56	30	11	5	52	1.59
72099--72146	22	2.2	20	80	20	53	18	0	25	56	1.42
72099--72150	21	2.4	22	81	12	63	19	0	25	55	1.43
72188--72230	3	14.3	3	85	0	59	60	4	2	32	1.30
73186--73622	217	2.0	217	98	0	847	34	13	23	28	1.92

Tables:   1

The End!