genome.fa.s1193.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001193.1 Hibiscus syriacus cultivar Beakdansim tig00002365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141150

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3721--3792	34	2.1	34	85	7	94	25	25	15	34	1.94
4267--4304	20	1.9	20	94	0	67	31	34	15	18	1.92
4315--4474	65	2.5	64	83	5	189	32	22	16	28	1.95
13059--13200	65	2.2	64	88	6	207	32	23	17	26	1.97
14121--14169	20	2.5	20	83	6	64	28	24	14	32	1.94
18644--18707	30	2.1	30	100	0	128	35	6	29	28	1.82
34996--35047	21	2.5	21	81	3	61	38	19	25	17	1.93
35036--35149	20	5.7	20	83	6	113	31	25	18	24	1.97
35033--35149	61	1.9	61	85	0	162	33	24	17	23	1.97
35723--35902	19	9.8	19	75	14	164	11	22	22	43	1.85
35723--35902	33	4.9	38	78	12	164	11	22	22	43	1.85
35845--35902	20	2.9	20	80	10	64	13	24	18	43	1.87
37903--38025	42	2.9	42	80	2	122	22	36	17	22	1.95
37959--38025	21	3.2	21	66	6	55	23	35	20	19	1.95
38354--38398	14	3.4	14	72	27	53	20	6	4	68	1.29
38349--38399	25	2.0	25	100	0	102	19	7	3	68	1.30
38351--38399	15	3.5	15	71	28	54	20	6	4	69	1.27
39276--39313	20	1.9	20	88	0	58	50	21	15	13	1.78
39563--39606	22	2.0	22	95	0	79	18	15	45	20	1.85
39794--39887	20	4.7	20	80	2	89	23	18	24	34	1.96
39814--39891	41	1.9	41	86	0	111	21	16	21	39	1.92
39774--39888	20	5.7	20	78	5	88	23	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39814--39909	41	2.3	41	80	3	104	20	19	21	37	1.94
51330--51368	20	2.0	20	94	0	69	25	10	10	53	1.66
58650--58694	15	3.0	15	75	12	56	57	2	31	8	1.41
59974--60032	3	19.7	3	92	0	100	33	3	0	62	1.12
60538--60576	19	2.0	19	90	5	60	71	7	20	0	1.10
61466--61506	20	2.0	21	85	4	57	36	2	2	58	1.24
72871--72905	7	4.9	7	86	6	52	88	0	11	0	0.51
72870--72906	10	3.5	10	86	13	56	89	0	10	0	0.49
72867--72907	15	2.7	15	85	14	66	85	0	14	0	0.60
72870--72906	12	3.4	11	89	10	58	89	0	10	0	0.49
73234--73277	17	2.6	17	92	3	72	31	6	6	54	1.53
74028--74690	83	7.9	84	96	0	1208	27	13	21	38	1.90
74030--74690	167	4.0	167	97	0	1227	27	12	21	38	1.90
74028--74690	250	2.6	250	96	0	1227	27	13	21	38	1.90
75419--75977	113	4.9	113	94	0	920	37	14	19	28	1.90
76299--76354	3	18.7	3	92	0	94	33	3	0	62	1.12
76826--76853	1	28.0	1	100	0	56	100	0	0	0	0.00
77796--77836	20	2.0	21	85	4	57	36	2	2	58	1.24
79190--79331	69	2.0	71	88	8	211	45	8	5	40	1.58
84690--84729	21	1.9	21	85	10	55	22	0	10	67	1.20
84689--84735	20	2.3	21	78	10	53	23	0	10	65	1.23
85000--85048	13	3.7	13	78	5	53	30	2	4	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85000--85056	27	2.1	27	80	6	62	29	1	5	63	1.27
84998--85157	79	2.1	77	89	4	241	31	1	8	58	1.38
84998--85199	79	2.6	80	82	10	206	28	3	8	59	1.44
88078--88125	23	2.1	23	96	0	87	43	10	16	29	1.81
101596--101644	15	3.3	15	100	0	98	32	20	6	40	1.77
101588--101644	30	1.9	30	92	7	98	35	19	7	38	1.79
108427--108486	20	2.6	24	75	25	74	71	8	8	11	1.30
108439--108489	20	2.5	20	100	0	102	64	9	9	15	1.48
109198--109232	10	3.4	10	88	4	52	40	28	2	28	1.71
109613--109651	19	2.1	19	90	0	60	23	38	12	25	1.90
109599--109759	65	2.5	65	84	3	200	30	26	15	27	1.96
114558--114596	19	2.1	19	95	0	69	20	38	15	25	1.92
114495--114703	65	3.2	63	82	7	206	29	25	17	27	1.97
114495--114724	64	3.6	64	79	6	207	28	26	17	27	1.98
117114--117153	20	2.0	20	90	0	62	57	7	2	32	1.40
134499--134544	20	2.3	19	89	10	74	32	0	2	65	1.05
135286--135369	33	2.5	34	82	3	109	25	11	21	41	1.87
135297--135491	102	1.9	100	81	10	234	22	10	24	42	1.84
135426--135530	38	2.9	36	85	7	131	16	8	33	41	1.78

Tables:   1

The End!