genome.fa.s1208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001208.1 Hibiscus syriacus cultivar Beakdansim tig00002389_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123510

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234--269	18	2.1	18	89	5	56	50	2	0	47	1.15
10263--10335	7	11.0	6	76	21	51	46	4	1	47	1.30
13881--13921	19	2.2	19	86	0	55	17	31	21	29	1.96
19011--19112	44	2.3	44	84	3	134	16	17	32	33	1.93
19836--19881	24	2.0	23	86	4	65	54	2	6	36	1.39
20585--20669	45	1.9	45	92	2	145	37	2	9	50	1.48
20599--20703	45	2.3	45	83	1	120	34	4	7	53	1.51
29807--29846	3	13.3	3	94	0	71	32	2	0	65	1.06
30034--30104	33	2.1	34	84	2	90	33	16	15	33	1.91
34329--34391	31	2.0	31	93	0	108	47	11	14	26	1.77
38223--38263	20	1.9	23	85	14	61	48	14	0	36	1.44
39241--39291	24	2.1	24	85	7	68	49	1	1	47	1.24
40525--40565	18	2.3	18	100	0	82	60	9	4	24	1.47
44030--44054	12	2.1	12	100	0	50	32	0	28	40	1.57
45779--45830	9	5.6	9	78	17	61	65	1	0	32	1.04
45782--45831	17	2.9	17	91	5	75	62	4	0	34	1.14
45779--45857	21	4.0	21	73	23	73	65	2	0	31	1.06
47380--47409	14	2.2	14	94	5	53	53	13	3	30	1.56
49230--49267	2	19.0	2	89	10	60	50	0	2	47	1.15
55166--55512	176	2.0	177	81	7	411	50	14	10	23	1.74
69781--69884	51	2.0	50	82	10	122	20	28	4	46	1.71
69882--70166	147	1.9	147	90	1	455	22	34	11	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73827--73853	6	4.5	6	100	0	54	18	48	18	14	1.82
89726--89881	81	1.9	81	83	8	201	38	21	14	26	1.91
89887--90103	82	2.7	80	78	7	258	45	21	13	19	1.85
90918--91048	37	3.6	37	81	10	153	41	14	12	31	1.82
91325--91383	22	2.8	20	78	16	59	20	6	5	67	1.33
91461--91591	9	15.0	8	69	19	50	16	6	0	75	1.06
91397--91520	41	3.0	42	83	10	139	29	3	0	66	1.13
91445--91511	33	2.0	35	82	11	86	25	2	0	71	1.00
91449--91513	30	2.1	30	85	5	85	24	3	0	72	0.99
91678--91707	15	2.0	15	93	0	51	23	16	0	60	1.36
93612--93651	18	2.2	18	100	0	80	20	32	12	35	1.90
94172--94210	8	5.0	8	84	6	53	10	17	12	58	1.61
95363--95444	16	5.1	16	73	21	57	76	8	13	1	1.06
95401--95468	23	2.9	23	76	18	61	73	8	14	2	1.19
96096--96146	22	2.3	22	96	0	93	35	27	11	25	1.91
96991--97270	36	7.9	36	78	9	290	26	19	14	39	1.90
97045--97233	102	1.9	102	86	2	272	28	18	13	39	1.89
97009--97333	138	2.4	137	82	2	409	28	20	12	38	1.89
98006--99086	105	10.3	105	91	1	1643	33	25	17	22	1.96
99634--99735	34	2.8	37	88	10	158	44	14	13	27	1.83
99634--99769	37	3.8	35	83	9	159	42	13	13	29	1.84
100036--100103	23	2.9	23	76	24	63	20	5	4	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100088--100225	38	3.6	39	77	16	130	30	2	1	65	1.13
100167--100302	15	8.9	15	69	18	70	19	4	0	75	1.01
100182--100270	25	3.7	24	73	18	69	21	3	1	74	1.03
100179--100302	29	4.1	29	72	14	92	18	4	0	76	0.99
100193--100261	25	2.8	24	79	16	70	21	2	1	73	1.04
100092--100236	41	3.5	42	76	10	122	28	2	1	67	1.10
100242--100273	12	2.6	12	95	5	55	15	6	0	78	0.95
100169--100302	61	2.2	60	81	9	155	18	4	0	76	1.00
100226--100301	13	5.8	13	80	6	66	15	5	1	77	1.01
100390--100419	15	2.0	15	93	0	51	23	20	0	56	1.42
106769--106797	7	4.1	7	100	0	58	68	17	13	0	1.20
108405--108452	2	24.0	2	100	0	96	50	0	0	50	1.00
109396--109432	13	2.7	15	88	12	53	35	0	0	64	0.94
112667--112724	20	2.9	20	89	0	80	34	22	8	34	1.85
112690--112741	20	2.7	20	87	3	70	34	17	9	38	1.82
116713--116751	2	19.5	2	100	0	78	48	0	0	51	1.00
117889--117947	25	2.3	25	79	2	64	37	13	10	38	1.79
117996--118055	31	2.0	31	90	3	95	40	5	25	30	1.77
118308--118374	23	2.9	23	80	10	82	22	28	20	28	1.99
118309--118383	24	3.2	24	80	12	84	24	25	21	29	1.99
118999--119037	20	2.0	20	84	0	51	28	28	17	25	1.98
119684--119738	24	2.3	24	96	0	101	38	9	20	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120968--121004	2	20.0	2	84	15	53	48	0	0	51	1.00

Tables:   1

The End!