genome.fa.s1231.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001231.1 Hibiscus syriacus cultivar Beakdansim tig00002424_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63020

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3161--3195	18	1.9	18	100	0	70	25	34	22	17	1.96
3438--3471	2	17.5	2	93	6	61	50	0	0	50	1.00
7259--7314	21	2.7	21	100	0	112	28	8	5	57	1.52
10222--10262	2	20.5	2	100	0	82	51	0	0	48	1.00
11944--12072	43	2.9	43	81	7	127	24	20	21	33	1.97
13817--13851	17	2.0	18	88	5	54	51	8	8	31	1.63
16510--16545	17	2.1	17	100	0	72	30	11	16	41	1.83
22066--22221	41	3.8	41	84	5	179	26	25	15	33	1.95
23888--23919	2	16.0	2	100	0	64	50	0	0	50	1.00
26333--26376	14	3.1	15	84	12	58	25	6	25	43	1.79
26428--26454	4	6.8	4	100	0	54	25	0	0	74	0.83
31066--31234	66	2.6	64	81	4	196	37	13	21	27	1.91
31239--31403	36	4.9	35	77	14	168	43	15	12	29	1.83
31537--31595	26	2.2	28	84	6	77	50	13	11	23	1.74
31555--31713	65	2.4	63	82	13	180	44	15	11	28	1.80
31675--31875	28	6.8	29	72	12	151	43	14	12	28	1.83
31554--31734	65	2.8	64	77	10	179	45	15	11	28	1.80
31626--31834	91	2.2	94	88	6	300	43	15	11	29	1.82
32009--32221	92	2.3	95	85	4	281	34	13	19	32	1.90
32149--32335	105	1.8	102	82	3	239	37	11	17	33	1.85
32309--32408	37	2.7	37	86	4	105	34	8	21	37	1.82
32328--32408	37	2.2	38	91	4	130	33	6	18	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32701--34670	4	495.2	4	98	1	3863	24	0	25	50	1.50
38488--38547	30	2.0	31	83	9	79	56	11	16	15	1.67
40282--40318	2	18.5	2	100	0	74	51	0	0	48	1.00
42521--42566	3	15.7	3	78	13	51	65	0	4	30	1.12
42515--42566	15	3.7	15	78	17	58	65	0	3	30	1.10
44413--44457	23	1.9	24	82	13	58	37	4	6	51	1.49
50743--50782	15	2.4	18	76	23	52	5	37	0	57	1.21
55381--55417	17	2.2	17	100	0	74	27	32	35	5	1.79
58208--58294	45	1.9	45	85	0	120	21	20	33	24	1.97
58217--58313	45	2.2	45	83	3	115	22	16	32	27	1.96

Tables:   1

The End!