Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001269.1 Hibiscus syriacus cultivar Beakdansim tig00002490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72248

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4055--4095
20
2.0
20
86
9
57
19
9
24
46
1.80
15629--15773
61
2.3
65
81
8
165
25
28
15
30
1.96
32231--32267
6
6.2
6
100
0
74
16
51
0
32
1.45
37395--37474
36
2.2
36
95
0
142
25
6
15
53
1.64
40254--40283
2
15.0
2
100
0
60
50
0
0
50
1.00
42064--42156
45
2.0
46
87
2
134
23
22
6
47
1.74
42086--42157
22
3.2
22
69
11
65
19
20
9
50
1.76
42223--42259
4
9.2
4
93
0
65
51
21
0
27
1.48
42773--42980
60
3.5
59
94
2
353
29
20
11
37
1.88
43020--43302
79
3.6
79
85
2
399
29
22
11
36
1.90
42980--43302
158
2.1
157
86
1
450
28
21
11
37
1.89
43780--43855
20
3.8
20
81
11
84
26
28
15
28
1.96
43800--43855
22
2.7
22
89
8
82
25
26
17
30
1.97
43729--43908
95
1.9
95
82
6
231
28
24
15
32
1.95
45642--45675
17
2.1
16
88
5
50
76
0
8
14
1.01
52503--52536
17
2.1
16
88
5
50
76
0
8
14
1.01
55447--55486
17
2.4
17
91
0
62
37
15
2
45
1.59
57073--57107
3
11.7
3
100
0
70
65
0
0
34
0.93
57106--57134
3
9.7
3
100
0
58
34
0
0
65
0.93
57675--57699
2
12.5
2
100
0
50
48
0
0
52
1.00
58083--58112
9
3.4
9
95
4
53
73
0
16
10
1.09
61344--61388
20
2.2
20
100
0
90
44
11
31
13
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62034--62058
13
1.9
13
100
0
50
48
12
0
40
1.40
63585--63774
65
3.0
64
83
6
226
32
11
14
41
1.81
64759--64789
16
1.9
16
100
0
62
25
41
12
19
1.87
66373--66401
15
1.9
15
100
0
58
6
0
10
82
0.83

Tables:   1

The End!