genome.fa.s1277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001277.1 Hibiscus syriacus cultivar Beakdansim tig00002507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  391084

Tables:   1   2   

This is table  1  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14892--14934	15	2.9	15	96	0	77	58	9	25	6	1.54
22574--22681	52	2.1	52	98	0	207	35	8	19	37	1.82
22588--22670	25	3.2	26	65	19	73	37	7	18	37	1.78
22589--22694	52	2.0	52	90	1	149	36	9	18	34	1.84
28046--28157	3	36.7	3	85	3	152	36	0	0	61	1.08
28275--28338	27	2.4	27	97	0	119	18	43	18	18	1.88
28581--28612	15	2.1	16	94	5	57	78	6	15	0	0.95
30450--30486	15	2.7	15	88	12	53	24	5	8	62	1.44
31907--31946	14	2.9	14	88	0	62	27	12	5	55	1.58
34491--34535	23	2.0	23	86	0	63	77	0	22	0	0.76
36783--37123	114	3.0	114	90	3	515	33	14	20	31	1.93
39210--39360	54	2.8	53	82	3	198	42	14	19	23	1.88
39210--39382	54	3.3	53	79	5	183	41	15	17	26	1.89
39751--39805	22	2.5	22	84	0	74	38	10	12	38	1.79
40476--42031	76	20.5	76	98	0	2981	23	20	20	35	1.96
42157--42259	3	33.7	3	86	3	143	36	0	0	62	1.02
42377--42440	27	2.4	27	97	0	119	18	43	18	18	1.88
42678--42713	15	2.2	17	85	14	58	77	5	16	0	0.94
53976--54028	23	2.3	23	83	0	61	37	13	11	37	1.80
53984--54032	23	2.1	23	84	0	71	40	16	12	30	1.85
57725--57844	42	2.9	42	96	0	222	15	20	19	45	1.86
58055--58091	18	2.1	18	89	0	56	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58118--58198	26	3.2	22	69	25	54	41	1	1	55	1.15
58058--58159	48	2.1	48	79	13	113	46	0	0	51	1.14
58363--58432	20	3.5	20	94	0	122	37	14	8	40	1.76
58363--58441	40	2.0	40	87	0	113	36	15	7	40	1.75
58415--58496	15	5.5	15	88	2	121	35	19	7	37	1.80
58415--58496	30	2.8	30	94	1	139	35	19	7	37	1.80
58415--58501	45	2.0	44	93	2	147	33	19	6	40	1.78
59150--59504	188	1.9	188	87	2	525	45	10	6	37	1.63
70308--70372	26	2.5	26	100	0	130	10	33	6	49	1.63
75023--75077	17	2.9	18	78	13	58	50	3	0	45	1.19
75067--75144	24	3.3	22	70	22	61	53	0	2	43	1.14
75045--75137	25	3.8	24	73	24	77	53	1	2	43	1.19
76656--76686	11	2.8	11	100	0	62	54	6	38	0	1.26
88894--88945	2	26.5	2	96	3	97	50	0	0	50	1.00
89332--89476	72	2.0	72	95	1	265	32	6	27	33	1.83
90546--90892	188	1.8	188	88	1	525	45	8	5	40	1.59
92035--92077	21	2.0	21	90	0	68	32	27	23	16	1.96
92105--92142	20	1.9	20	88	0	58	23	34	31	10	1.89
92906--93061	31	5.0	31	92	1	251	20	18	22	38	1.93
96860--96924	29	2.2	29	88	0	94	13	23	38	24	1.91
100975--101033	15	3.9	15	68	16	50	54	18	0	27	1.44
100981--101053	30	2.5	30	86	6	96	52	16	0	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101547--101587	21	2.0	21	90	0	64	56	14	2	26	1.51
101601--101647	15	3.4	15	77	19	57	0	40	0	59	0.97
101599--101632	11	3.0	11	91	4	50	0	41	0	58	0.98
108946--109015	34	2.1	33	83	2	86	32	15	27	24	1.95
111681--111753	15	4.0	18	78	21	89	31	12	6	49	1.67
112067--112114	21	2.3	21	85	3	62	31	22	22	22	1.99
112383--112424	15	2.7	16	77	7	50	30	7	11	50	1.66
112475--112544	34	2.1	33	83	2	86	34	15	27	22	1.95
112866--112918	23	2.3	23	93	0	88	32	26	20	20	1.98
117428--117516	29	3.0	28	78	12	90	43	5	17	32	1.73
117795--117834	16	2.5	16	100	0	80	35	10	17	37	1.83
133167--133233	19	3.7	18	75	9	64	17	0	4	77	0.93
139556--139586	3	10.3	3	100	0	62	67	0	32	0	0.91
139997--140050	14	4.3	13	70	25	53	79	0	18	1	0.82
139983--140058	23	3.2	22	78	19	73	77	0	17	5	0.94
139954--140058	24	4.3	24	76	19	85	74	0	19	5	1.07
140003--140047	17	2.7	16	83	16	56	80	0	17	2	0.82
142021--142923	33	27.2	33	86	1	1180	39	18	20	21	1.93
144297--144361	27	2.5	26	82	12	80	18	0	4	76	0.95
144279--144361	36	2.3	36	77	8	89	21	1	6	71	1.15
150046--150089	20	2.2	20	100	0	88	25	29	29	15	1.96
152370--152431	30	2.1	30	100	0	124	41	3	29	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152415--152478	32	2.0	32	100	0	128	37	12	18	31	1.88
154755--154859	42	2.5	42	76	7	104	32	22	19	25	1.97
156559--156640	29	2.8	29	94	1	137	32	14	9	42	1.79
161326--161407	29	2.8	29	94	1	137	32	14	9	42	1.79
165441--165611	83	2.1	83	80	4	184	36	15	16	30	1.91
177286--177392	52	2.1	52	100	0	214	39	14	7	38	1.75
177372--177402	2	15.5	2	100	0	62	51	0	0	48	1.00
178099--178153	26	2.1	26	86	0	74	30	20	12	36	1.90
185031--185105	31	2.5	30	82	6	80	49	6	1	42	1.37
185137--185185	16	2.8	17	78	12	55	38	2	4	55	1.31
185196--185228	17	1.9	17	100	0	66	21	6	6	66	1.35
197412--197445	9	3.8	9	88	0	50	23	11	17	47	1.81
201805--201873	29	2.4	29	74	11	70	23	15	7	53	1.67
207583--207650	27	2.6	27	95	4	122	41	16	11	30	1.84
211189--211256	27	2.6	27	95	4	122	41	16	11	30	1.84
214042--214071	13	2.3	13	100	0	60	46	6	6	40	1.56
221240--221304	28	2.3	29	84	7	89	20	21	12	46	1.83
222656--222719	21	3.2	20	84	4	76	81	1	12	4	0.92
222657--222734	29	2.7	27	86	11	95	79	1	15	3	0.94
222656--222726	20	3.6	19	80	19	76	80	1	14	4	0.93
222662--222734	16	4.7	15	72	14	58	79	1	16	2	0.92
224490--224524	4	8.8	4	93	0	61	51	20	0	28	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224703--225007	55	5.6	53	84	5	308	32	10	15	41	1.81
225075--225170	42	2.3	41	83	7	122	22	20	21	34	1.97
225031--225573	275	2.0	274	88	2	813	28	14	20	36	1.92
226123--226156	17	2.0	17	100	0	68	47	5	23	23	1.73
226133--226622	139	3.5	139	91	0	766	34	18	22	25	1.96
232040--232618	289	2.0	289	96	0	1061	36	12	19	30	1.89
233232--233264	17	1.9	17	93	0	57	30	36	12	21	1.90
237060--237114	24	2.3	24	80	0	65	10	18	32	38	1.85
250623--250680	2	29.0	2	100	0	116	50	0	0	50	1.00
252425--252458	12	2.8	12	100	0	68	17	47	0	35	1.48
257553--257586	12	2.8	12	100	0	68	17	47	0	35	1.48
258204--258274	34	2.1	34	97	0	133	19	15	11	53	1.72
262048--262104	26	2.2	26	100	0	114	33	28	10	28	1.90
263316--263350	17	2.1	17	100	0	70	42	11	11	34	1.77
266258--266298	19	2.2	19	90	0	64	46	0	9	43	1.36
266355--266417	18	3.3	18	75	12	63	42	3	4	49	1.39
266400--266432	14	2.4	14	94	0	57	27	6	9	57	1.53
267192--267238	18	2.7	18	84	12	55	38	0	0	61	0.96
267320--267367	19	2.5	20	80	6	55	45	4	8	41	1.53
267441--267466	4	6.5	4	100	0	52	26	0	23	50	1.50
267559--267703	18	8.6	18	68	18	105	42	8	5	43	1.57
267559--267647	33	2.7	33	92	0	142	42	7	5	43	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267590--267703	51	2.2	51	95	0	201	42	7	5	43	1.56
267883--267924	12	3.5	12	78	21	52	45	2	0	52	1.13
268799--268842	12	3.8	12	90	3	63	11	9	47	31	1.71
268797--268842	24	2.0	24	91	4	76	10	10	47	30	1.73
268860--268920	24	2.6	25	78	17	69	44	0	0	55	0.99
268952--268995	13	3.5	13	93	3	72	13	15	52	18	1.75
273780--273864	37	2.3	37	86	6	120	42	20	4	32	1.72
278417--278480	20	3.4	20	66	29	59	45	18	4	31	1.70
278367--278488	35	3.4	36	87	6	176	43	18	4	32	1.72
279701--279752	20	2.5	21	84	3	70	38	19	23	19	1.93

Tables:   1   2