genome.fa.s1277.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001277.1 Hibiscus syriacus cultivar Beakdansim tig00002507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  391084

Tables:   1   2   

This is table  2  of  2  ( 225 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279783--279835	20	2.7	20	93	0	88	24	28	20	26	1.99
280348--280414	19	3.5	19	81	2	80	50	22	16	10	1.75
280410--280574	19	9.1	19	70	15	116	12	23	20	44	1.85
280462--280549	33	2.6	33	89	1	140	10	27	22	39	1.86
280517--280574	20	2.9	20	80	10	64	13	24	18	43	1.87
282264--282448	91	2.0	90	90	6	291	22	11	18	47	1.81
282670--282757	42	2.1	41	80	2	104	22	37	15	23	1.93
286085--286109	12	2.1	12	100	0	50	0	28	0	72	0.86
286284--286339	25	2.2	25	90	0	85	42	19	16	21	1.89
287327--287396	20	3.6	19	84	5	86	34	22	22	20	1.97
287422--287486	19	3.7	19	86	13	95	13	21	18	46	1.84
287492--287530	20	2.0	20	94	0	69	12	10	30	46	1.75
287613--287649	14	2.6	14	86	0	56	48	21	0	29	1.50
289518--289585	20	3.5	20	79	2	75	41	22	20	16	1.90
289574--289613	14	2.9	14	96	0	71	50	30	15	5	1.65
289647--289704	14	3.9	14	77	16	62	12	17	20	50	1.78
289630--289717	32	2.7	33	89	3	142	12	19	19	48	1.80
289705--289759	20	2.8	19	81	8	56	18	23	21	36	1.95
290241--290285	18	2.5	18	88	0	72	13	15	44	26	1.83
291605--291642	20	1.9	20	88	0	58	50	21	15	13	1.78
291904--291947	22	2.0	22	95	0	79	18	15	45	20	1.85
292136--292187	20	2.6	20	93	0	86	25	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294969--295003	3	11.7	3	100	0	70	65	0	34	0	0.93
295002--295028	3	9.0	3	100	0	54	33	0	33	33	1.58
296428--296477	21	2.4	21	93	0	82	34	30	14	22	1.93
302314--302371	12	4.7	13	75	14	52	63	0	5	31	1.16
302314--302370	13	4.5	13	79	18	57	63	0	5	31	1.17
303792--303817	10	2.6	10	100	0	52	34	0	23	42	1.54
311928--311991	29	2.1	31	85	5	87	32	4	23	39	1.75
313532--313563	2	16.0	2	100	0	64	50	0	0	50	1.00
316645--316778	67	2.0	67	88	0	196	29	29	15	25	1.96
318185--318228	20	2.2	20	88	4	63	36	25	0	38	1.56
318377--318413	20	1.9	19	89	10	58	45	10	24	18	1.81
319969--320038	29	2.4	29	72	9	70	32	15	2	48	1.60
320852--320877	10	2.6	10	100	0	52	34	0	23	42	1.54
329045--329108	29	2.1	31	85	5	87	32	4	23	39	1.75
330656--330704	2	24.5	2	100	0	98	48	0	0	51	1.00
333791--333924	67	2.0	67	88	0	196	29	29	15	25	1.96
335334--335377	20	2.2	20	88	4	63	36	25	0	38	1.56
335526--335562	20	1.9	19	89	10	58	45	10	24	18	1.81
337118--337187	29	2.4	29	72	9	70	32	15	2	48	1.60
344387--344483	23	4.4	22	82	12	83	28	26	17	26	1.98
344407--344483	23	3.4	23	87	3	111	29	25	18	25	1.98
345144--345205	19	3.2	19	93	2	97	20	32	12	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345144--345225	39	2.1	39	81	4	94	23	30	13	32	1.93
346256--346404	71	2.1	71	79	8	153	51	4	1	42	1.31
346409--346604	75	2.7	72	82	7	222	53	5	3	37	1.42
346425--346604	74	2.5	72	79	10	208	55	5	3	35	1.42
346418--346604	69	2.6	73	82	6	222	54	5	3	35	1.43
347766--347844	30	2.7	30	88	3	117	37	39	3	18	1.69
347899--347931	16	2.1	16	88	11	50	36	0	0	63	0.95
353649--353734	28	3.0	28	81	11	79	61	2	0	36	1.09
353663--353708	13	3.5	13	83	13	58	65	0	0	34	0.93
353988--354029	22	2.0	22	85	4	59	26	4	54	14	1.59
356589--356622	2	17.0	2	100	0	68	50	0	0	50	1.00
359041--359159	55	2.2	57	83	8	149	36	19	8	35	1.82
359308--359456	42	3.6	42	78	8	144	32	22	19	25	1.98
359375--359436	20	2.9	22	69	9	65	33	25	16	24	1.95
359519--359687	85	2.0	85	90	2	268	33	15	27	24	1.95
359814--360062	52	4.6	53	79	6	234	40	19	8	31	1.82
360064--360146	39	2.1	39	84	0	103	37	13	18	31	1.89
360122--360269	36	4.1	36	86	1	217	41	11	22	24	1.87
360130--360268	71	2.0	71	89	0	215	41	10	23	24	1.86
360229--360398	65	2.6	65	87	1	243	40	11	20	27	1.87
360286--360484	101	2.0	102	83	6	253	43	10	19	26	1.83
360657--360799	73	2.0	72	83	6	182	38	14	16	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360789--360903	37	3.1	37	81	7	133	38	11	20	30	1.87
362274--362300	13	2.1	13	100	0	54	44	7	0	48	1.31
363225--363272	20	2.3	21	89	3	71	52	10	20	16	1.73
369536--369588	24	2.2	25	89	3	81	41	20	9	28	1.83
372011--372063	2	26.5	2	96	0	97	50	0	0	49	1.00
372101--372127	14	1.9	14	100	0	54	29	7	18	44	1.77
372178--372340	72	2.3	72	89	3	240	44	3	7	43	1.51
372163--372340	35	5.0	35	83	8	200	44	3	7	43	1.50
372303--372404	26	3.9	26	92	1	159	41	2	7	48	1.47
372389--372464	16	4.5	17	76	11	68	36	1	5	56	1.30
372368--372450	34	2.5	32	81	11	80	37	1	7	54	1.36
372394--372471	29	2.7	29	84	9	90	34	1	7	56	1.36
372389--372482	29	3.5	26	78	17	79	34	1	6	58	1.30
372558--372596	18	2.2	18	100	0	78	23	43	23	10	1.84
373682--373715	12	2.7	13	90	9	61	14	5	0	79	0.91
373689--373744	18	3.2	17	89	5	76	16	7	0	76	0.99
373682--373739	30	1.9	30	80	13	57	13	6	0	79	0.93
373682--373738	29	2.0	30	86	13	84	14	7	0	78	0.94
373683--373745	29	2.1	30	83	13	78	17	6	0	76	0.99
379914--380239	85	3.8	85	88	0	472	33	20	19	26	1.96
380833--380858	13	2.0	13	100	0	52	38	0	7	53	1.30
380926--381096	34	4.9	34	85	7	202	43	4	9	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380932--381096	71	2.4	71	86	7	232	45	3	9	41	1.53
381112--381179	2	34.5	2	88	8	104	45	0	2	51	1.16
381096--381207	30	3.9	29	77	15	110	41	0	5	52	1.30
381097--381207	15	7.8	14	77	15	79	40	0	5	53	1.30
381112--381204	14	6.9	13	83	10	91	41	0	5	52	1.24
381210--381250	11	3.6	11	83	3	55	7	7	0	85	0.75
387983--388056	31	2.4	31	88	0	103	28	12	16	43	1.83
388390--388423	18	2.0	17	88	11	52	23	0	0	76	0.79
388434--388539	39	2.7	39	77	11	126	38	14	2	44	1.60
388806--388871	24	2.5	26	77	18	75	42	4	0	53	1.21
388806--388873	27	2.7	24	78	13	75	42	4	0	52	1.21
390324--390387	17	3.9	17	82	14	80	40	3	12	43	1.58
390352--390434	34	2.4	35	87	4	123	40	3	12	43	1.59
390434--390472	2	20.5	2	89	10	64	51	0	0	48	1.00
390434--390474	17	2.4	17	91	0	73	51	0	0	48	1.00
390516--390558	20	2.2	20	87	8	61	37	0	6	55	1.27
390567--390616	12	4.3	12	75	14	52	18	8	0	74	1.06

Tables:   1   2

The End!