genome.fa.s1288.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001288.1 Hibiscus syriacus cultivar Beakdansim tig00002522_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65557

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180--218	20	2.0	19	90	5	60	33	23	0	43	1.54
340--556	110	2.0	107	90	6	339	35	8	9	46	1.68
6022--6144	49	2.5	51	88	5	180	27	23	23	25	2.00
6156--6283	51	2.5	51	89	1	186	17	32	33	15	1.92
8153--8216	23	2.8	23	68	17	60	42	4	7	45	1.54
11010--11093	41	2.0	41	100	0	168	25	15	21	38	1.92
12201--12409	45	4.6	45	90	0	310	23	22	13	40	1.90
12420--12706	55	5.3	55	85	3	330	33	16	14	35	1.89
12478--12710	55	4.3	55	89	3	348	36	16	12	35	1.86
14243--14305	20	3.1	20	90	4	99	57	0	4	38	1.20
14250--14305	21	2.7	21	97	2	105	60	0	3	35	1.14
17801--17825	2	12.5	2	100	0	50	48	0	0	52	1.00
18729--18775	24	2.0	24	91	0	76	46	2	6	44	1.40
26170--26239	33	2.2	32	82	14	83	47	1	4	47	1.31
26250--26287	13	3.0	13	80	7	51	50	7	5	36	1.54
26232--26286	12	4.2	13	76	15	51	43	5	7	43	1.55
26334--26406	26	2.9	26	80	15	82	47	1	5	45	1.34
26371--26411	2	20.5	2	94	0	73	48	0	0	51	1.00
26494--26546	7	7.4	7	91	2	52	43	35	0	20	1.52
26507--26546	14	2.9	14	96	0	71	45	37	0	17	1.49
26494--26547	21	2.5	21	84	3	72	42	35	0	22	1.54
26568--26632	17	3.8	16	79	18	69	49	3	6	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26570--26615	20	2.3	20	92	3	76	47	2	8	41	1.46
28968--29034	7	9.6	7	83	0	89	44	38	0	16	1.48
28968--29034	21	3.2	21	89	0	98	44	38	0	16	1.48
28979--29041	21	3.0	21	85	0	90	42	34	0	22	1.54
29143--29213	37	2.0	36	86	5	99	43	9	9	36	1.71
29194--29293	19	4.9	21	79	15	104	45	7	6	42	1.56
29335--29410	21	3.6	21	75	12	66	39	5	5	50	1.48
29427--29533	22	4.9	22	74	18	82	48	5	1	43	1.37
29398--29577	66	2.8	64	79	11	204	44	4	3	47	1.39
29429--29540	43	2.6	44	72	19	110	47	4	2	45	1.37
29516--29582	15	4.6	14	74	18	57	43	1	2	52	1.25
29535--29582	16	3.1	16	73	14	55	39	2	2	56	1.23
29522--29582	30	2.0	29	87	6	86	40	1	3	54	1.27
29872--29925	23	2.3	24	93	3	92	48	11	0	40	1.39
29964--30017	22	2.3	25	87	12	87	38	1	0	59	1.08
32916--32984	34	2.0	34	100	0	138	21	8	17	52	1.71
32928--33000	34	2.1	34	82	5	85	27	6	17	47	1.73
40311--41312	314	3.2	313	88	2	1446	29	14	17	38	1.90
41253--41552	148	2.0	148	99	0	591	34	9	11	44	1.72
41070--42073	505	2.0	505	99	0	1981	31	12	14	41	1.82
41758--42057	148	2.0	148	100	0	600	34	9	11	44	1.73
42402--42447	24	1.9	24	95	0	83	30	13	23	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46251--46325	23	3.3	23	94	0	132	13	21	21	44	1.86
48136--49151	325	3.2	321	86	3	1359	28	15	17	38	1.90
49667--49706	14	2.8	14	80	3	53	17	5	5	72	1.21
49778--49829	23	2.3	23	96	0	95	11	21	23	44	1.84
49365--50399	324	3.1	328	81	9	1132	28	15	17	39	1.90
50844--50889	24	1.9	24	90	0	74	32	13	21	32	1.92
54227--55883	323	5.2	319	84	4	1950	29	14	16	38	1.89
54232--55883	635	2.6	640	84	4	2095	29	14	16	38	1.89
56337--56388	24	2.2	24	85	0	77	38	9	19	32	1.84
57032--57086	20	2.8	20	97	2	103	49	10	21	18	1.78
59076--59145	34	2.0	35	88	2	106	35	10	15	38	1.81
61273--61351	38	2.1	38	95	0	140	40	5	10	44	1.60
62680--62705	12	2.2	12	100	0	52	19	0	38	42	1.51
62946--63470	200	2.6	196	85	5	689	39	13	15	31	1.86
63555--63599	23	2.0	23	90	0	72	37	20	11	31	1.87

Tables:   1

The End!