genome.fa.s1291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001291.1 Hibiscus syriacus cultivar Beakdansim tig00002527_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115585

Tables:   1   

This is table  1  of  1  ( 101 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200--352	42	3.7	43	81	11	171	29	20	7	41	1.81
2382--2446	30	2.2	29	83	8	78	33	13	4	47	1.64
5826--5867	9	4.9	9	82	8	52	57	0	0	42	0.99
5830--5868	17	2.3	17	90	0	60	58	0	0	41	0.98
7215--7282	22	3.2	21	73	6	57	72	1	1	25	1.02
8573--8634	14	4.2	14	74	15	54	58	1	0	40	1.08
8618--8665	2	24.5	2	95	4	89	50	0	0	50	1.00
9022--9178	37	4.1	37	74	11	154	40	15	17	26	1.90
9694--9815	43	2.8	43	100	0	244	19	17	31	31	1.95
13773--13843	21	3.4	21	75	5	63	73	1	1	23	1.00
15654--15884	126	1.8	126	90	2	340	42	10	9	37	1.72
16897--16922	13	2.0	13	100	0	52	0	30	23	46	1.53
17418--18230	113	6.9	122	84	8	685	26	19	15	38	1.91
17696--18231	113	4.6	114	87	4	690	26	20	14	38	1.91
17450--18230	227	3.3	228	81	9	789	26	19	15	38	1.91
18171--18271	40	2.5	40	91	0	166	19	23	9	46	1.80
18058--18384	153	2.1	153	94	1	575	25	21	14	38	1.91
18452--18593	76	1.9	76	93	0	248	37	19	17	25	1.94
19275--19325	22	2.3	22	89	0	84	41	13	9	35	1.78
21806--22025	114	1.9	114	93	0	377	30	21	15	33	1.94
26184--26222	20	2.0	20	84	0	51	53	7	12	25	1.65
28785--28823	18	2.2	18	85	0	51	38	0	7	53	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28854--28887	16	2.0	18	88	11	54	26	2	5	64	1.30
30736--30984	130	1.9	131	89	0	383	33	13	15	37	1.86
31382--31457	35	2.2	35	95	0	134	36	1	23	38	1.64
32086--32143	27	2.2	26	81	9	64	56	1	6	34	1.36
33279--33319	9	4.6	9	84	9	57	58	0	2	39	1.11
33279--33339	18	3.5	18	78	17	58	59	0	1	39	1.08
33294--33332	19	2.1	18	85	4	51	61	0	0	38	0.96
33327--33384	2	29.5	2	96	3	109	50	0	0	50	1.00
34599--34632	14	2.4	14	90	0	50	38	14	8	38	1.78
34650--34698	14	3.4	15	83	5	66	32	22	4	40	1.73
34642--34698	29	2.0	29	89	0	87	35	19	3	42	1.68
41532--41613	25	3.3	24	73	11	85	25	19	24	30	1.98
41616--41662	24	2.0	24	91	0	76	19	23	25	31	1.98
41540--41632	49	1.9	48	86	4	134	26	20	21	31	1.98
41540--41671	47	2.8	49	78	12	132	25	19	22	32	1.97
43000--43026	7	3.9	7	100	0	54	0	29	11	59	1.32
44213--44370	21	7.8	20	72	7	86	38	25	17	18	1.92
44337--44546	20	10.5	20	86	2	233	38	24	17	19	1.93
45228--45274	24	2.0	24	87	8	69	25	14	21	38	1.92
45449--45473	12	2.1	12	100	0	50	72	0	28	0	0.86
47806--47903	19	5.4	19	84	13	143	14	22	17	45	1.84
47787--47903	53	2.2	53	98	1	227	13	23	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47962--48072	52	2.1	53	98	1	215	45	18	23	13	1.84
48013--48104	33	2.8	33	96	0	166	45	19	21	13	1.84
48032--48088	14	3.7	14	75	20	60	43	21	24	10	1.83
48117--48216	19	5.5	19	84	12	147	15	23	17	45	1.85
48100--48216	53	2.2	53	95	1	209	14	24	17	43	1.86
48323--48359	14	2.6	14	91	0	65	45	21	0	32	1.52
50334--50390	14	3.7	14	77	20	60	45	22	21	10	1.82
50315--50407	33	2.8	33	95	0	168	47	21	20	10	1.80
50278--50412	19	7.6	19	76	16	128	45	23	19	11	1.82
50408--50536	19	7.3	19	75	17	125	8	17	28	45	1.77
50408--50499	33	2.8	33	93	3	150	7	18	28	45	1.76
50580--51052	93	5.1	93	98	0	912	45	19	12	22	1.83
52757--52846	14	5.7	14	74	23	81	42	23	25	8	1.83
52749--52863	33	3.5	33	95	0	212	45	20	24	9	1.81
52756--52868	19	6.8	18	72	23	88	43	22	24	9	1.83
52880--52936	14	3.7	14	75	20	60	8	24	22	43	1.81
52864--52944	33	2.5	33	95	0	144	8	22	22	46	1.78
52921--52996	21	3.7	21	83	3	109	11	25	17	46	1.82
52920--52997	41	1.9	41	97	0	147	12	25	16	44	1.83
53076--53146	33	2.2	33	89	0	106	47	16	23	11	1.79
53328--53382	22	2.5	22	81	0	74	20	16	40	23	1.91
53528--53682	20	7.7	20	82	7	206	21	19	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53528--53721	60	3.2	60	82	2	246	19	18	25	36	1.94
53708--53790	21	4.0	21	73	6	78	25	16	24	33	1.96
54598--54930	162	2.1	162	94	0	576	29	16	11	42	1.83
55213--55263	20	2.5	20	93	3	84	17	15	21	45	1.86
55373--55833	112	4.1	112	92	0	746	26	14	13	45	1.83
55373--55833	223	2.1	223	92	0	753	26	14	13	45	1.83
56103--56142	6	6.3	6	97	2	62	85	0	0	15	0.61
60029--60061	12	2.8	12	95	0	57	15	42	24	18	1.88
61334--61367	3	11.0	3	93	6	59	35	0	0	64	0.94
61330--61365	16	2.2	16	95	0	63	33	0	0	66	0.92
62723--62769	20	2.3	21	75	10	53	25	4	8	61	1.43
63020--63044	11	2.3	11	100	0	50	32	8	0	60	1.26
65241--65284	14	3.1	14	83	0	61	27	15	2	54	1.53
70782--71120	114	3.0	114	93	0	554	33	15	20	31	1.93
73578--73632	22	2.5	22	84	0	74	36	12	14	36	1.84
74018--75485	116	12.7	116	97	0	2734	36	12	20	30	1.89
74018--75841	232	8.0	232	94	3	3149	36	12	19	31	1.89
74018--75841	348	5.3	347	94	2	3132	36	12	19	31	1.89
75264--75700	214	2.0	214	97	0	820	36	11	20	31	1.89
75380--75584	98	2.1	98	95	0	365	36	12	19	31	1.89
75478--75841	116	3.2	115	90	3	519	36	12	20	30	1.90
75769--75824	17	3.2	17	74	18	60	50	7	21	21	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75807--75990	84	2.2	82	83	3	226	39	16	16	27	1.91
76161--76210	3	16.0	3	91	8	82	34	0	0	66	0.92
76157--76210	19	2.8	19	94	5	92	33	0	0	66	0.92
76164--76210	16	2.9	16	96	0	85	34	0	0	65	0.93
77563--77609	20	2.3	21	75	10	53	25	4	8	61	1.43
77860--77884	11	2.3	11	100	0	50	32	8	0	60	1.26
79422--79495	20	3.7	20	81	0	76	52	14	10	21	1.72
79460--79506	20	2.3	20	88	0	67	51	14	10	23	1.74
85229--85334	55	1.9	55	98	0	203	41	11	14	33	1.81
88670--88763	23	4.0	24	84	5	131	32	23	21	22	1.98
90105--90193	45	2.0	45	82	8	110	31	19	8	40	1.82
91849--91893	16	2.8	16	83	9	56	60	26	0	13	1.34
99697--99794	44	2.2	45	78	5	110	35	14	17	32	1.90

Tables:   1

The End!