genome.fa.s1292.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001292.1 Hibiscus syriacus cultivar Beakdansim tig00002528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174166

Tables:   1   2   

This is table  1  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752--1808	2	28.5	2	100	0	114	50	0	0	49	1.00
6049--6117	30	2.3	29	76	9	77	46	1	1	50	1.19
9331--9373	20	2.0	21	86	8	61	53	6	6	32	1.55
23741--23784	16	2.8	16	86	6	54	18	29	0	52	1.46
27020--27080	14	4.6	14	73	17	51	47	14	0	37	1.45
27911--27948	19	2.0	19	100	0	76	26	15	10	47	1.78
27913--27956	19	2.3	19	92	0	70	27	15	15	40	1.88
28070--28127	20	2.7	20	86	10	71	27	22	18	31	1.97
28115--28255	64	2.2	63	80	8	153	25	24	17	32	1.97
30837--30905	23	3.0	23	73	0	66	28	23	24	23	1.99
31908--31952	21	2.1	21	87	0	63	31	28	24	15	1.96
32465--32511	23	2.0	24	91	4	78	44	0	21	34	1.52
32689--32875	31	6.0	31	93	1	304	20	19	21	37	1.94
35731--35775	21	2.1	21	87	0	63	31	28	24	15	1.96
36288--36334	23	2.0	24	91	4	78	44	0	21	34	1.52
36512--36698	31	6.0	31	93	1	304	20	19	21	37	1.94
37720--37861	63	2.2	65	83	5	173	26	19	20	34	1.96
38405--38431	11	2.5	11	100	0	54	62	0	37	0	0.95
40452--40509	20	2.7	20	86	10	71	27	22	18	31	1.97
47139--47186	22	2.2	22	85	3	62	56	14	18	10	1.66
50124--50168	15	2.9	15	90	3	63	24	0	2	73	0.95
50124--50170	16	3.0	16	78	6	51	25	0	2	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50422--50481	13	4.8	13	78	15	72	71	1	0	26	0.95
50417--50461	21	2.1	21	91	0	72	75	0	0	24	0.80
50417--50477	16	4.0	16	77	12	56	72	1	0	26	0.94
50417--50469	21	2.5	21	87	0	70	73	1	0	24	0.93
50417--50481	21	3.3	20	73	20	66	72	1	0	26	0.94
51049--51161	37	3.0	37	89	2	181	45	11	10	32	1.75
51049--51158	38	2.9	38	91	1	177	45	11	10	32	1.74
52090--52150	2	30.5	2	96	0	113	47	0	1	50	1.10
53471--53514	23	1.9	23	95	0	79	22	20	27	29	1.99
53436--53588	83	1.8	83	90	0	243	22	28	20	28	1.99
53931--53992	28	2.1	30	94	5	110	29	0	14	56	1.39
54462--54523	17	3.5	17	77	12	70	41	0	11	46	1.39
57867--57980	49	2.3	48	91	4	192	44	0	9	45	1.36
57993--58326	156	2.1	155	92	1	551	44	2	8	44	1.48
57968--58382	11	35.9	11	71	17	160	44	2	8	44	1.47
58108--58220	48	2.4	47	93	3	190	48	5	5	40	1.48
58206--58361	45	3.3	45	71	13	143	41	1	11	44	1.51
58214--58374	48	3.4	48	71	13	141	43	1	10	44	1.49
58166--58383	96	2.3	97	84	5	282	44	2	10	43	1.52
57993--58380	156	2.5	153	87	6	521	44	2	8	44	1.48
58970--59252	144	2.0	139	95	3	503	35	7	11	46	1.67
59985--60022	15	2.5	15	100	0	76	34	7	34	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63992--64036	23	2.0	23	90	0	72	35	2	2	60	1.22
68270--68605	162	2.1	162	90	1	530	41	14	16	27	1.88
72794--72851	24	2.4	24	85	11	82	34	3	12	50	1.57
72813--72849	18	2.1	18	89	0	56	32	5	10	51	1.60
72805--72857	24	2.2	24	86	0	70	35	3	13	47	1.61
74392--75342	199	4.8	199	90	2	1441	38	14	14	31	1.87
74392--75342	397	2.4	395	91	1	1528	38	14	14	31	1.87
80231--80286	3	19.0	3	85	3	78	32	3	1	62	1.23
81860--81918	29	2.0	30	83	9	77	25	8	8	57	1.56
86538--86617	26	3.3	25	73	19	89	26	23	10	40	1.86
86548--86631	20	4.0	20	74	18	71	27	25	10	36	1.89
86546--86636	46	2.0	46	84	4	121	26	26	10	36	1.90
87212--87278	19	3.7	18	80	13	68	74	10	11	2	1.17
88447--88521	12	5.6	12	70	22	51	46	26	0	26	1.53
88446--88521	16	5.2	16	75	23	87	47	26	0	26	1.52
88446--88521	28	2.7	28	97	0	143	47	26	0	26	1.52
88459--88509	4	13.8	4	76	15	56	47	23	0	29	1.52
88878--89015	36	3.9	35	82	7	170	31	20	13	35	1.90
88881--89015	71	1.9	72	87	4	202	31	20	13	34	1.91
88989--89226	105	2.3	101	82	5	282	31	19	11	37	1.88
89173--89253	36	2.3	36	80	2	92	32	19	9	38	1.85
89188--89291	36	3.0	36	81	4	124	32	20	11	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89550--89617	25	2.5	26	86	11	93	26	11	14	47	1.79
89536--89630	28	3.5	26	79	13	102	26	10	14	48	1.76
89626--89728	52	2.0	53	94	1	181	32	14	17	35	1.90
89715--89782	28	2.4	28	87	4	93	33	8	13	44	1.74
89760--89871	37	3.2	37	68	17	112	28	11	12	47	1.76
89727--89952	67	3.5	64	85	5	267	30	11	11	45	1.77
90016--90042	1	27.0	1	100	0	54	100	0	0	0	0.00
90414--90457	15	2.9	15	93	0	70	31	20	4	43	1.72
90660--90828	67	2.6	65	81	8	191	25	20	16	37	1.93
90938--91302	40	8.6	40	69	13	176	25	29	20	25	1.99
90941--91262	130	2.5	130	90	2	504	25	28	19	25	1.99
91067--91391	170	1.9	171	92	0	544	24	29	19	26	1.99
91554--91609	3	19.0	3	85	3	78	32	3	1	62	1.23
93187--93245	29	2.0	29	81	12	68	25	8	8	57	1.56
95979--96026	24	2.0	24	87	0	69	35	2	0	62	1.07
96584--96723	64	2.2	64	83	5	176	25	17	27	29	1.98
97526--97588	21	3.1	21	77	9	67	34	4	15	44	1.68
97517--97595	23	3.3	23	68	23	65	35	5	15	44	1.68
97745--97815	7	10.3	7	70	3	54	47	32	0	19	1.50
97745--97815	14	5.1	14	78	10	65	47	32	0	19	1.50
97930--97956	13	2.1	13	100	0	54	44	0	0	55	0.99
97969--98045	18	4.1	19	91	3	77	49	3	2	44	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97980--98051	2	35.0	2	88	5	108	50	2	1	45	1.25
98088--98147	21	2.9	22	78	9	72	53	25	0	21	1.46
98438--98495	22	2.4	25	83	11	77	39	1	0	58	1.08
98488--98540	20	2.5	20	72	6	52	47	5	9	37	1.60
98519--98613	48	2.0	49	85	2	129	49	8	7	34	1.61
98524--98627	48	2.1	49	82	7	122	50	10	6	32	1.63
98610--98668	28	2.1	28	83	0	73	52	25	0	22	1.47
99022--99074	20	2.5	20	72	6	52	47	5	9	37	1.60
99150--99214	14	4.7	14	76	3	69	49	24	0	26	1.51
99157--99209	27	1.9	28	84	3	72	50	22	0	26	1.49
99505--99562	22	2.5	23	81	18	68	43	1	0	55	1.10
99717--99747	14	2.2	14	94	0	53	54	29	0	16	1.42
100119--100148	13	2.3	13	100	0	60	53	6	0	40	1.27
100088--100138	20	2.4	21	74	9	59	45	5	7	41	1.57
100229--100293	14	4.7	14	73	3	51	49	21	0	29	1.50
97833--100516	533	5.0	533	93	2	4308	42	12	9	36	1.74
100538--100652	3	38.7	3	85	1	160	34	1	0	62	1.11
101102--101183	32	2.5	33	78	20	100	67	7	20	4	1.35
101132--101183	24	2.1	25	86	10	72	69	5	21	3	1.26
101970--102018	19	2.7	18	87	9	73	16	4	6	73	1.19
101986--102027	19	2.2	19	83	8	50	26	2	4	66	1.23
102056--102090	12	2.8	13	91	8	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102788--102839	13	4.2	12	83	16	54	25	1	0	73	0.94
102795--102836	16	2.6	16	82	17	52	26	0	0	73	0.83
104459--104512	14	3.8	14	81	11	56	25	14	9	50	1.73
104474--104512	15	2.7	15	88	4	53	20	15	12	51	1.76
107445--107474	2	15.0	2	100	0	60	50	0	0	50	1.00
112348--112423	40	1.9	40	91	0	125	31	14	23	30	1.94
112813--112867	22	2.5	22	90	0	92	34	12	14	38	1.84
113269--113915	119	5.5	118	92	3	990	36	14	19	28	1.92
114070--114184	3	38.7	3	85	1	160	34	1	0	62	1.11
114666--114715	23	2.1	24	85	10	68	68	6	22	4	1.29

Tables:   1   2