Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001292.1 Hibiscus syriacus cultivar Beakdansim tig00002528_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  174166

Tables:   1   2   

This is table  2  of  2  ( 158 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115507--115555
19
2.7
18
87
9
73
16
4
6
73
1.19
115595--115629
12
2.8
13
91
8
56
42
0
0
57
0.99
116365--116396
13
2.5
13
100
0
64
53
6
0
40
1.26
116349--116398
22
2.3
22
82
6
57
52
8
4
36
1.50
116471--116541
14
5.1
14
79
3
72
49
28
0
22
1.50
116471--116547
41
1.9
40
89
2
118
49
25
0
24
1.51
116707--116753
14
3.7
14
71
26
50
51
4
0
44
1.21
116705--116754
23
2.1
24
96
3
93
48
4
0
48
1.20
117020--117106
16
5.4
16
87
0
129
41
12
26
19
1.87
118720--118751
16
2.1
15
94
5
55
18
0
3
78
0.89
119591--119647
29
2.0
29
85
0
78
22
5
21
50
1.68
122488--122524
17
2.2
17
90
4
58
24
8
0
67
1.17
123016--123074
2
29.5
2
100
0
118
49
0
0
50
1.00
128025--128057
16
2.1
16
88
11
50
63
9
12
15
1.51
139629--139688
31
1.9
31
90
6
95
43
3
8
45
1.50
139711--139921
22
9.6
22
85
0
287
47
9
0
42
1.36
139908--139947
12
3.6
12
77
16
50
52
0
2
45
1.14
140303--140329
14
1.9
14
100
0
54
59
0
0
40
0.98
150022--150106
43
2.0
43
83
0
107
22
18
28
30
1.97
150102--150275
43
4.1
43
89
0
233
22
15
21
40
1.91
153639--153900
41
6.4
41
72
8
183
33
19
17
29
1.95
153659--153901
82
3.0
82
81
3
224
32
19
17
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156044--156412
183
2.0
183
92
2
616
42
3
8
45
1.51
156418--156451
9
3.7
9
96
4
59
23
8
17
50
1.74
156461--156689
72
3.2
72
66
10
209
36
24
13
25
1.92
156560--156601
22
1.9
22
90
0
66
30
16
16
35
1.92
156437--156730
141
2.1
141
99
0
579
35
22
14
28
1.93
160441--160468
2
14.0
2
100
0
56
50
0
0
50
1.00
171745--171778
18
1.9
18
88
5
52
14
29
32
23
1.94
171760--171811
24
2.2
24
96
0
95
19
28
28
23
1.98
172047--172092
19
2.4
19
96
0
83
47
0
13
39
1.42
172642--172688
21
2.2
21
88
0
76
19
25
19
36
1.95
172684--172731
20
2.4
20
89
0
69
41
14
16
27
1.87
172693--172739
20
2.3
20
92
0
76
40
12
19
27
1.88
172703--172828
40
3.2
40
84
5
96
30
25
19
25
1.98
172731--172828
20
5.0
20
90
5
155
26
27
20
25
1.99
172731--172829
38
2.5
39
90
4
155
27
27
20
25
1.99
173635--173687
23
2.3
22
87
9
79
22
18
18
39
1.92

Tables:   1   2

The End!